Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-246 855.1 429 100.0
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-220 769.6 445 90.6
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-212 742.7 440 88.2
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.9e-184 649.4 449 76.6
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 3.6e-183 645.2 447 74.7
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.0e-182 643.7 448 75.4
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.8e-180 635.6 449 74.4
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 2.8e-180 635.6 449 75.1
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 3.7e-180 635.2 448 74.8
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-179 633.3 449 75.1
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-179 630.9 449 74.8
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 9.1e-179 630.6 449 74.8
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 9.1e-179 630.6 449 74.8
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 4.5e-178 628.2 448 74.3
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.9e-178 627.9 449 73.1
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-177 627.1 449 74.2
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.0e-177 627.1 451 74.5
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 3.8e-177 625.2 448 73.4
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 7.4e-173 610.9 438 73.1
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-167 592.8 447 72.0
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.5e-160 570.1 446 66.6
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-152 543.1 422 69.7
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 9.4e-152 540.8 448 67.0
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.4e-149 532.3 441 61.5
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 9.5e-144 514.2 389 71.7
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.1e-143 513.1 446 60.8
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 4.4e-141 505.4 446 59.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 7.5e-141 504.6 446 59.6
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 9.8e-141 504.2 445 60.2
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 3.7e-140 502.3 446 59.0
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-139 500.7 446 58.3
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 7.0e-139 498.0 446 58.1
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 4.3e-136 488.8 446 57.6
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.2e-135 487.3 446 56.7
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.2e-135 487.3 446 57.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.2e-135 487.3 446 57.8
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.6e-135 486.9 446 57.0
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.8e-135 486.1 447 57.5
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.6e-135 485.7 446 56.7
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 5.2e-134 481.9 444 56.8
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.9e-134 481.1 446 56.3
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.2e-132 476.5 446 56.1
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 6.4e-132 474.9 446 55.6
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 6.4e-132 474.9 450 55.8
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.1e-131 474.2 446 56.3
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.1e-131 474.2 446 56.1
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.4e-131 473.0 446 55.8
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 4.1e-131 472.2 446 56.7
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 3.5e-130 469.2 441 56.2
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-129 466.1 418 58.1
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 5.0e-129 465.3 438 55.9
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 8.6e-129 464.5 422 57.1
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.5e-128 463.8 447 55.9
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.5e-128 463.8 467 54.4
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 4.3e-128 462.2 446 54.7
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 7.3e-128 461.5 471 54.4
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.4e-126 457.2 446 54.9
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.8e-126 456.8 446 54.5
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.3e-126 456.4 446 53.8
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.3e-126 456.4 447 55.3
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 5.2e-126 455.3 446 54.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 5.2e-126 455.3 446 54.3
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 8.9e-126 454.5 446 53.8
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.5e-125 453.8 446 54.0
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.3e-124 450.7 420 56.4
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 2.2e-124 449.9 446 52.9
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 4.9e-124 448.7 446 53.8
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 6.4e-124 448.4 429 55.5
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 8.3e-124 448.0 446 53.8
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.9e-123 446.8 446 52.9
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.4e-123 446.4 446 52.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 3.2e-123 446.0 447 53.2
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.7e-122 443.0 446 54.0
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 2.7e-122 443.0 446 52.2
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 3.5e-122 442.6 448 52.5
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 3.5e-122 442.6 447 53.2
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.5e-122 442.6 453 54.1
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 4.6e-122 442.2 446 52.9
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.3e-121 440.7 446 53.4
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.3e-121 440.7 446 52.5
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.0e-121 439.5 446 52.9
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.9e-121 439.1 447 52.6
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 5.1e-121 438.7 447 53.2
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.1e-120 437.6 446 52.5
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.9e-120 436.8 447 52.6
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 9.5e-120 434.5 447 52.3
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.2e-119 434.1 448 51.8
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-119 433.7 396 58.3
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 2.1e-119 433.3 447 53.0
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.8e-119 433.0 444 53.2
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 8.1e-119 431.4 446 50.7
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.1e-118 431.0 447 51.9
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-118 430.6 451 52.3
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.2e-117 427.6 446 51.1
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 6.4e-116 421.8 447 50.3
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.2e-114 417.5 439 51.3
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 2.7e-114 416.4 444 51.4
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 9.5e-112 407.9 426 51.2
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 2.1e-111 406.8 417 53.5
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 8.1e-111 404.8 364 58.2
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 1.4e-110 404.1 441 50.6
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 5.8e-109 398.7 445 48.3
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 9.9e-109 397.9 446 48.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 4.9e-108 395.6 444 48.6
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 2.4e-107 393.3 464 48.9
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 4.2e-107 392.5 398 53.3
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 1.6e-106 390.6 226 91.2
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 2.1e-106 390.2 432 50.0
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.7e-105 387.1 435 50.3
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 3.9e-105 386.0 440 50.2
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.6e-101 373.2 419 49.2
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.6e-101 373.2 426 47.4
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 5.4e-99 365.5 449 45.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 5.6e-96 355.5 448 45.3
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 7.3e-96 355.1 419 46.8
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 6.9e-94 348.6 481 42.6
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.0e-93 347.1 470 43.8
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.9e-91 340.5 357 51.8
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 3.2e-91 339.7 444 44.1
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 4.2e-91 339.3 322 55.6
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.7e-87 326.2 419 45.3
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 3.7e-79 299.7 439 41.2
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 3.6e-66 256.5 447 37.1
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 4.2e-59 233.0 309 51.1
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 5.3e-54 216.1 179 60.9
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 9.1e-54 215.3 179 60.9
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.5e-53 214.5 413 33.7
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 6.5e-52 209.1 385 35.6
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.0e-49 201.8 202 53.5
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 2.8e-47 193.7 354 38.7
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.2e-44 184.1 196 52.0
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.5e-43 181.4 216 47.2
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.2e-40 171.8 189 49.7
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 4.8e-39 166.4 187 48.7
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-37 161.8 202 49.5
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-36 157.9 144 62.5
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-36 156.8 186 45.7
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-36 156.8 144 61.8
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 3.8e-36 156.8 148 53.4
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 5.5e-35 152.9 202 48.5
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.3e-31 139.4 115 66.1
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-29 135.2 166 45.8
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 2.7e-29 134.0 205 46.3
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 2.9e-28 130.6 131 57.3
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.7e-26 123.2 94 63.8
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 8.0e-26 122.5 169 49.1
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 5.9e-21 106.3 85 60.0
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.7e-20 104.8 149 43.6
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 6.6e-20 102.8 93 54.8
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.9e-19 101.3 95 62.1
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.6e-18 97.1 85 57.6
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 2.3e-17 94.4 88 63.6
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 6.4e-15 86.3 87 43.7
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 8.3e-15 85.9 51 70.6
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 6.0e-13 79.7 50 78.0
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.0e-12 79.0 49 67.3
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-12 78.2 45 82.2
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-12 78.2 45 82.2
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-12 78.2 45 82.2
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 1.1e-11 75.5 50 76.0
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 1.6e-10 71.6 177 36.7
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 1.4e-09 68.6 56 62.5
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 4.0e-09 67.0 42 78.6
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 4.4e-08 63.5 57 52.6
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 4.4e-08 63.5 57 52.6
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.9e-07 60.8 173 26.6
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.7e-07 60.5 159 27.7
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.7e-07 60.5 159 27.0
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.1e-06 58.9 97 37.1
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-06 57.8 53 52.8
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 3.2e-06 57.4 40 62.5
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 9.2e-06 55.8 53 49.1
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.2e-06 55.8 84 38.1
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.2e-06 55.8 56 46.4


User provided reference genes

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