Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17822 Brassica carinata HOM05D006167 ORTHO05D007635 7.6e-26 119.8 63 100.0
BcaC07g37498 Brassica carinata HOM05D006167 ORTHO05D007635 7.6e-26 119.8 63 100.0
A08p07960 Brassica napus HOM05D006167 ORTHO05D007635 7.6e-26 119.8 63 100.0
BolC8t47817H Brassica oleracea HOM05D006167 ORTHO05D007635 7.6e-26 119.8 63 100.0
BraA08t32818Z Brassica rapa HOM05D006167 ORTHO05D007635 7.6e-26 119.8 63 100.0
Sp7g11110 Schrenkiella parvula HOM05D006167 ORTHO05D007635 6.5e-25 116.7 63 96.8
AT4G13520 Arabidopsis thaliana HOM05D006167 ORTHO05D007635 5.5e-24 113.6 63 90.5
Carub.0007s2902 Capsella rubella HOM05D006167 ORTHO05D007635 1.2e-23 112.5 63 90.5
AL7G43090 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 1.6e-23 112.1 63 88.9
Thhalv10026745m.g Eutrema salsugineum HOM05D006167 ORTHO05D007635 4.6e-23 110.5 63 92.1
CARHR219150 Cardamine hirsuta HOM05D006167 ORTHO05D007635 3.9e-22 107.5 63 85.7
AL5G12040 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 3.3e-21 104.4 63 85.7
AL5G12300 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 3.3e-21 104.4 63 85.7
Aa31LG9G4150 Aethionema arabicum HOM05D006167 ORTHO05D007635 4.3e-21 104.0 64 87.5
THA.LOC109117012 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 4.5e-18 94.0 63 76.2
THA.LOC109116489 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 8.5e-17 89.7 63 73.0
THA.LOC109116515 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 8.5e-17 89.7 63 73.0
Potri.008G174000 Populus trichocarpa HOM05D006167 ORTHO05D007635 1.4e-16 89.0 63 69.8
CSS0017011 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 1.6e-15 85.5 63 66.7
CSS0046609 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 1.6e-15 85.5 63 66.7
Potri.010G063100 Populus trichocarpa HOM05D006167 ORTHO05D007635 2.1e-15 85.1 63 65.1
Actinidia32969 Actinidia chinensis HOM05D006167 ORTHO05D007635 2.7e-15 84.7 65 67.7
Atru.chr4.1872 Acer truncatum HOM05D006167 ORTHO05D007635 2.3e-14 81.6 63 61.9
Prupe.1G052700 Prunus persica HOM05D006167 ORTHO05D007635 2.3e-14 81.6 63 65.1
Cpa.g.sc59.38 Carica papaya HOM05D006167 ORTHO05D007635 3.0e-14 81.3 63 61.9
CiPaw.01G175200 Carya illinoinensis HOM05D006167 ORTHO05D007635 3.9e-14 80.9 63 63.5
Sed0006558 Sechium edule HOM05D006167 ORTHO05D007635 5.1e-14 80.5 63 61.9
TWI09G0967 Tripterygium wilfordii HOM05D006167 ORTHO05D007635 5.1e-14 80.5 63 63.5
ClCG06G007470 Citrullus lanatus HOM05D006167 ORTHO05D007635 6.7e-14 80.1 63 60.3
Lalb_Chr03g0036881 Lupinus albus HOM05D006167 ORTHO05D007635 4.3e-13 77.4 63 61.9
CsaV3_2G012210 Cucumis sativus L. HOM05D006167 ORTHO05D007635 5.7e-13 77.0 63 58.7
MELO3C023070.2 Cucumis melo HOM05D006167 ORTHO05D007635 7.4e-13 76.6 63 57.1
RcHm_v2.0_Chr4g0396111 Rosa chinensis HOM05D006167 ORTHO05D007635 1.6e-12 75.5 61 59.0
CANSAT78G0928 Cannabis sativa HOM05D006167 ORTHO05D007635 2.2e-12 75.1 63 60.3
Hma1.2p1_0112F.1_g054980 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 2.2e-12 75.1 62 54.8
Glyma.20G081600 Glycine max HOM05D006167 ORTHO05D007635 2.8e-12 74.7 58 62.1
Duzib052G0384 Durio zibethinus HOM05D006167 ORTHO05D007635 6.3e-12 73.6 63 58.7
Duzib052G0895 Durio zibethinus HOM05D006167 ORTHO05D007635 6.3e-12 73.6 63 58.7
Duzib266G0005 Durio zibethinus HOM05D006167 ORTHO05D007635 6.3e-12 73.6 63 58.7
Eucgr.H02882 Eucalyptus grandis HOM05D006167 ORTHO05D007635 6.3e-12 73.6 64 57.8
Ca_26216_v3 Cicer arietinum L. HOM05D006167 ORTHO05D007635 1.1e-11 72.8 58 60.3
Nn1g03031 Nelumbo nucifera HOM05D006167 ORTHO05D007635 1.4e-11 72.4 63 57.1
TAR362G1146 Trochodendron aralioides HOM05D006167 ORTHO05D007635 1.4e-11 72.4 63 57.1
Cfa014825 Carpinus fangiana HOM05D006167 ORTHO05D007635 1.8e-11 72.0 60 58.3
Ca_00011_v3 Cicer arietinum L. HOM05D006167 ORTHO05D007635 1.8e-11 72.0 58 58.6
Nitab4.5_0000867g0070 Nicotiana tabacum HOM05D006167 ORTHO05D007635 1.8e-11 72.0 63 57.1
Thecc.04G269200 Theobroma cacao HOM05D006167 ORTHO05D007635 2.4e-11 71.6 63 57.1
Dinv29784 Davidia involucrata HOM05D006167 ORTHO05D007635 4.1e-11 70.9 63 55.6
HanXRQChr13g0410431 Helianthus annuus HOM05D006167 ORTHO05D007635 6.9e-11 70.1 65 52.3
CAN.G566.4 Capsicum annuum HOM05D006167 ORTHO05D007635 9.1e-11 69.7 67 58.2
FAN12G1688 Fragaria x ananassa HOM05D006167 ORTHO05D007635 9.1e-11 69.7 61 57.4
FAN17G0547 Fragaria x ananassa HOM05D006167 ORTHO05D007635 9.1e-11 69.7 61 57.4
Solyc12g097040.1 Solanum lycopersicum HOM05D006167 ORTHO05D007635 9.1e-11 69.7 65 56.9
PGR004G2513 Punica granatum HOM05D006167 ORTHO05D007635 1.2e-10 69.3 63 54.0
EL10Ac3g06721 Beta vulgaris HOM05D006167 ORTHO05D007635 1.5e-10 68.9 64 57.8
Gohir.D02G050200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.5e-10 68.9 63 55.6
vmacro15491 Vaccinium macrocarpon HOM05D006167 ORTHO05D007635 1.5e-10 68.9 57 57.9
vmacro22827 Vaccinium macrocarpon HOM05D006167 ORTHO05D007635 1.5e-10 68.9 57 57.9
Hma1.2p1_0144F.1_g065120 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 2.0e-10 68.6 60 55.0
Lj4g0015547 Lotus japonicus HOM05D006167 ORTHO05D007635 2.0e-10 68.6 64 57.8
FvH4_4g05200 Fragaria vesca HOM05D006167 ORTHO05D007635 2.6e-10 68.2 61 55.7
Hma1.2p1_0432F.1_g151790 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 2.6e-10 68.2 61 52.5
CANSAT54G0143 Cannabis sativa HOM05D006167 ORTHO05D007635 3.4e-10 67.8 58 56.9
Rhsim09G0043900 Rhododendron simsii HOM05D006167 ORTHO05D007635 3.4e-10 67.8 51 70.6
Oeu012938.1 Olea europaea HOM05D006167 ORTHO05D007635 4.5e-10 67.4 65 55.4
Aqoxy5G00097 Aquilegia oxysepala HOM05D006167 ORTHO05D007635 5.9e-10 67.0 63 58.7
Cc03_g06850 Coffea canephora HOM05D006167 ORTHO05D007635 5.9e-10 67.0 67 50.7
Gorai.011G088300 Gossypium raimondii HOM05D006167 ORTHO05D007635 5.9e-10 67.0 63 55.6
COL.COLO4_16007 Corchorus olitorius HOM05D006167 ORTHO05D007635 7.7e-10 66.6 60 56.7
Gorai.012G072500 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.0e-09 66.2 63 55.6
Gohir.D09G064700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.7e-09 65.5 63 54.0
arahy.Tifrunner.gnm1.ann1.C36CE0 Arachis hypogaea HOM05D000254 ORTHO05D000165 2.2e-09 65.1 47 66.0
Dinv18834 Davidia involucrata HOM05D006167 ORTHO05D007635 2.9e-09 64.7 63 55.6
Gohir.D04G064600 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.9e-09 64.7 63 55.6
Gorai.004G118700 Gossypium raimondii HOM05D006167 ORTHO05D007635 5.0e-09 63.9 63 52.4
SHI00872 Sapria himalayana HOM05D006167 ORTHO05D007635 5.0e-09 63.9 61 52.5
DCAR_027359 Daucus carota HOM05D006167 ORTHO05D007635 6.5e-09 63.5 61 59.0
Gohir.D11G199000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 6.5e-09 63.5 63 52.4
Peaxi162Scf01007g00005 Petunia axillaris HOM05D006167 ORTHO05D007635 6.5e-09 63.5 71 50.7
Gorai.005G130300 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.1e-08 62.8 63 54.0
Lsat_1_v5_gn_1_76160 Lactuca sativa HOM05D006167 ORTHO05D007635 1.4e-08 62.4 62 48.4
Gohir.D08G110800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.9e-08 62.0 63 50.8
Gorai.008G097400 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.9e-08 62.0 63 52.4
TPR.G23974 Trifolium pratense HOM05D006167 ORTHO05D007635 1.9e-08 62.0 58 55.2
Psat6g109400 Pisum sativum HOM05D006167 ORTHO05D007635 2.5e-08 61.6 58 50.0
Hma1.2p1_0014F.1_g009760 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 3.2e-08 61.2 60 48.3
Lsat_1_v5_gn_2_42001 Lactuca sativa HOM05D006167 ORTHO05D007635 3.2e-08 61.2 65 49.2
Gorai.007G213200 Gossypium raimondii HOM05D006167 ORTHO05D007635 4.2e-08 60.8 63 50.8
Gorai.009G336300 Gossypium raimondii HOM05D006167 ORTHO05D007635 4.2e-08 60.8 63 50.8
Sc19g0005700 Simmondsia chinensis HOM05D006167 ORTHO05D007635 5.5e-08 60.5 64 56.2
Gohir.D03G098800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 7.2e-08 60.1 63 50.8
Gohir.D08G046000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 7.2e-08 60.1 62 51.6
Gorai.008G094700 Gossypium raimondii HOM05D006167 ORTHO05D007635 7.2e-08 60.1 62 51.6
Gohir.D12G087200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 9.4e-08 59.7 63 52.4
Gorai.011G155100 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.6e-07 58.9 63 50.8
Phvul.007G232600 Phaseolus vulgaris HOM05D006167 ORTHO05D007635 2.1e-07 58.5 63 55.6
Gohir.D05G314750 Gossypium hirsutum HOM05D006167 ORTHO05D007635 3.6e-07 57.8 63 49.2
CARHR100370 Cardamine hirsuta HOM05D024673 ORTHO05D026828 4.6e-07 57.4 68 52.9
Gohir.D02G123800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 4.6e-07 57.4 63 49.2
Gorai.003G103700 Gossypium raimondii HOM05D006167 ORTHO05D007635 6.1e-07 57.0 63 49.2
AUR62035353 Chenopodium quinoa HOM05D006167 ORTHO05D007635 7.9e-07 56.6 54 55.6
Gohir.D01G140700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.8e-06 55.5 63 47.6
SalBow3G0251 Salvia bowleyana HOM05D006167 ORTHO05D007635 2.3e-06 55.1 66 45.5
SalBow3G4531 Salvia bowleyana HOM05D006167 ORTHO05D007635 2.3e-06 55.1 66 45.5
Gohir.D10G139400 Gossypium hirsutum HOM05D006167 ORTHO05D007635 3.0e-06 54.7 63 47.6
SalBow5G0916 Salvia bowleyana HOM05D006167 ORTHO05D007635 3.0e-06 54.7 65 44.6
SalBow5G2020 Salvia bowleyana HOM05D006167 ORTHO05D007635 3.0e-06 54.7 65 44.6
unitig_744.g24610 Utricularia gibba HOM05D006167 ORTHO05D007635 3.9e-06 54.3 54 50.0
SalBow5G4407 Salvia bowleyana HOM05D006167 ORTHO05D007635 6.7e-06 53.5 66 43.9
SalBow5G4759 Salvia bowleyana HOM05D006167 ORTHO05D007635 6.7e-06 53.5 66 43.9
Atru.chr1.877 Acer truncatum HOM05D006167 ORTHO05D007635 8.8e-06 53.1 49 59.2


User provided reference genes

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