Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 5.6e-147 524.2 263 100.0
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 3.8e-111 405.2 211 95.7
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 6.7e-108 394.4 201 96.5
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.1e-107 393.7 201 98.0
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.5e-107 393.3 201 96.0
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 6.5e-103 377.9 201 92.5
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 7.4e-91 337.8 204 83.8
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 3.3e-83 312.4 201 81.1
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 1.7e-79 300.1 215 74.4
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 3.4e-75 285.8 202 74.3
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 5.2e-68 261.9 211 66.4
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 5.7e-59 231.9 197 64.0
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 3.7e-58 229.2 169 74.6
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 3.2e-49 199.5 208 55.3
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 9.2e-49 198.0 205 55.1
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.7e-48 196.4 205 55.1
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 6.0e-48 195.3 201 54.2
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 7.8e-48 194.9 201 53.7
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.9e-47 192.6 203 54.7
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 5.0e-47 192.2 210 51.9
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.5e-46 190.7 201 54.2
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.5e-46 190.7 203 54.2
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.9e-46 190.3 203 53.7
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.9e-46 190.3 203 53.7
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.5e-46 189.9 110 84.5
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.5e-46 189.9 205 54.1
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 2.5e-46 189.9 203 51.7
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 3.3e-46 189.5 201 54.2
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 3.3e-46 189.5 201 53.7
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 4.3e-46 189.1 201 54.2
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 4.3e-46 189.1 201 52.2
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.6e-46 188.7 201 54.7
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.6e-46 188.7 205 53.7
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 5.6e-46 188.7 201 54.2
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.3e-46 188.3 201 54.2
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 1.2e-45 187.6 204 53.4
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.6e-45 187.2 201 53.7
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.6e-45 187.2 205 54.6
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.6e-45 187.2 201 53.2
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 2.8e-45 186.4 207 52.7
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 3.6e-45 186.0 203 53.2
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.6e-45 186.0 203 53.2
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.6e-45 186.0 212 52.4
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 3.6e-45 186.0 202 53.0
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 6.2e-45 185.3 203 52.2
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 6.2e-45 185.3 202 53.5
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 8.1e-45 184.9 201 53.2
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.4e-44 184.1 203 52.2
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.8e-44 183.7 202 52.5
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.8e-44 183.7 201 50.2
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.8e-44 183.7 211 49.8
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.8e-44 183.7 204 51.5
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.3e-44 183.3 201 52.2
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.3e-44 183.3 201 52.2
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.0e-44 182.6 205 52.2
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 4.0e-44 182.6 205 52.2
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 5.2e-44 182.2 202 51.5
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 5.2e-44 182.2 203 51.7
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.8e-44 181.8 207 52.2
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.9e-44 181.4 201 51.7
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.5e-43 180.6 204 51.5
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.0e-43 180.3 201 49.8
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.6e-43 179.9 210 50.0
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 3.4e-43 179.5 207 51.2
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 4.4e-43 179.1 201 52.2
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 4.4e-43 179.1 201 49.8
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 5.8e-43 178.7 210 50.5
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 9.9e-43 177.9 203 51.7
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 9.9e-43 177.9 204 52.9
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 9.9e-43 177.9 201 52.7
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 9.9e-43 177.9 201 51.7
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.3e-42 177.6 207 50.2
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.3e-42 177.6 201 49.8
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.3e-42 177.6 201 50.7
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.7e-42 177.2 209 50.2
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.7e-42 177.2 210 49.5
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.7e-42 177.2 210 49.5
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.7e-42 177.2 206 51.5
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.7e-42 177.2 204 52.0
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.9e-42 176.4 203 51.7
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.7e-42 176.0 216 48.6
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 6.4e-42 175.3 216 49.1
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 6.4e-42 175.3 201 48.8
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.1e-41 174.5 268 42.9
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.9e-41 173.7 201 51.2
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.4e-41 173.3 235 45.5
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 4.1e-41 172.6 211 47.4
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 7.1e-41 171.8 201 49.3
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 1.2e-40 171.0 210 50.5
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.2e-40 171.0 205 49.8
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.1e-40 170.2 212 49.5
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 2.7e-40 169.9 202 49.5
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.7e-40 169.9 120 71.7
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 6.0e-40 168.7 206 48.5
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 7.8e-40 168.3 203 48.8
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 7.8e-40 168.3 202 50.5
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 7.8e-40 168.3 201 50.2
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 7.8e-40 168.3 205 48.8
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.7e-39 167.2 215 47.4
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 3.0e-39 166.4 213 48.4
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 3.9e-39 166.0 201 50.7
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 5.1e-39 165.6 99 78.8
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 5.1e-39 165.6 201 47.8
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 6.6e-39 165.2 208 48.1
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 8.6e-39 164.9 207 48.8
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.9e-38 163.7 79 98.7
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.9e-38 163.7 79 98.7
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.9e-38 163.7 192 48.4
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.9e-38 163.7 201 48.3
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.3e-38 162.9 120 69.2
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 5.6e-38 162.2 205 48.8
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 5.6e-38 162.2 205 50.2
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 9.5e-38 161.4 207 46.9
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.2e-37 161.0 203 48.3
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.1e-37 160.2 221 47.5
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 2.1e-37 160.2 123 65.9
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 2.1e-37 160.2 201 48.8
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 2.8e-37 159.8 98 77.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.6e-37 159.5 101 73.3
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.6e-37 159.5 232 42.7
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.6e-37 159.5 205 47.8
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.7e-37 159.1 129 65.1
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 4.7e-37 159.1 100 76.0
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 6.2e-37 158.7 252 40.9
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 6.2e-37 158.7 204 47.1
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 8.1e-37 158.3 205 47.8
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.1e-36 157.9 225 44.9
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.1e-36 157.9 201 45.3
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.8e-36 157.1 202 48.0
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 3.1e-36 156.4 201 46.3
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 4.0e-36 156.0 125 64.0
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 5.2e-36 155.6 111 69.4
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 5.2e-36 155.6 112 68.8
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.6e-35 153.3 102 72.5
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 3.4e-35 152.9 206 47.1
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 3.4e-35 152.9 97 75.3
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 5.8e-35 152.1 211 46.9
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.8e-35 152.1 103 67.0
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 9.9e-35 151.4 99 71.7
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.3e-34 151.0 203 45.3
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.7e-34 150.6 98 70.4
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 2.9e-34 149.8 204 45.1
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 4.9e-34 149.1 214 42.5
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 1.1e-33 147.9 205 45.9
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.4e-33 147.5 97 72.2
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 4.1e-33 146.0 114 63.2
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 7.1e-33 145.2 203 43.8
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.1e-32 143.7 117 61.5
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.0e-31 141.4 202 46.0
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.0e-31 141.4 237 41.4
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 8.7e-31 138.3 111 62.2
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.2e-29 134.4 135 53.3
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.1e-29 133.7 129 55.0
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.8e-28 130.6 104 63.5
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 6.4e-26 122.1 169 44.4
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.1e-25 121.3 79 72.2
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.0e-23 113.2 95 56.8
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 8.7e-23 111.7 85 62.4
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 4.8e-21 105.9 89 61.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 9.0e-20 101.7 124 49.2
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 5.1e-15 85.9 80 50.0
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.6e-11 72.0 80 48.8
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 2.7e-08 63.5 42 66.7
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.8e-07 60.8 104 35.6
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 3.0e-07 60.1 204 29.4
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 8.7e-07 58.5 41 63.4


User provided reference genes

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