Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p06990 Brassica napus HOM05D000522 ORTHO05D024576 3.3e-46 188.0 90 100.0
C08p08250 Brassica napus HOM05D039156 ORTHO05D024576 2.3e-28 128.6 94 73.4
BraA08t32709Z Brassica rapa HOM05D039156 ORTHO05D024576 2.0e-19 99.0 79 69.6
Sp7g10940 Schrenkiella parvula HOM05D000522 ORTHO05D004380 3.4e-19 98.2 86 64.0
BcaC02g09431 Brassica carinata HOM05D000522 ORTHO05D004380 7.6e-19 97.1 91 59.3
C04p42550 Brassica napus HOM05D000522 ORTHO05D004380 7.6e-19 97.1 91 59.3
BolC4t25830H Brassica oleracea HOM05D000522 ORTHO05D004380 7.6e-19 97.1 91 59.3
BraA04t16571Z Brassica rapa HOM05D000522 ORTHO05D004380 7.6e-19 97.1 91 59.3
CARHR218930 Cardamine hirsuta HOM05D000522 ORTHO05D004380 1.3e-18 96.3 91 59.3
AL9U10300 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 2.2e-18 95.5 91 60.4
AT4G13360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 2.2e-18 95.5 92 58.7
Carub.0007s2921 Capsella rubella HOM05D000522 ORTHO05D004380 2.2e-18 95.5 92 57.6
A04p08740 Brassica napus HOM05D000522 ORTHO05D004380 2.9e-18 95.1 91 58.2
Thhalv10025298m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 8.4e-18 93.6 90 58.9
BcaB03g16093 Brassica carinata HOM05D000522 ORTHO05D004380 5.4e-17 90.9 91 57.1
Aa31LG9G4380 Aethionema arabicum HOM05D000522 ORTHO05D004380 1.2e-16 89.7 87 59.8
Sp3g22170 Schrenkiella parvula HOM05D000522 ORTHO05D004380 6.0e-16 87.4 87 55.2
BcaC01g03316 Brassica carinata HOM05D000522 ORTHO05D004380 1.3e-15 86.3 87 54.0
C03p53740 Brassica napus HOM05D000522 ORTHO05D004380 1.3e-15 86.3 87 54.0
BolC3t17634H Brassica oleracea HOM05D000522 ORTHO05D004380 1.3e-15 86.3 87 54.0
BraA03t13500Z Brassica rapa HOM05D000522 ORTHO05D004380 1.3e-15 86.3 87 55.2
CARHR100460 Cardamine hirsuta HOM05D000522 ORTHO05D004380 2.3e-15 85.5 87 54.0
BolC8t47677H Brassica oleracea HOM05D039156 ORTHO05D024576 3.0e-15 85.1 76 63.2
Carub.0003s2470 Capsella rubella HOM05D000522 ORTHO05D004380 5.1e-15 84.3 87 52.9
Manes.03G069100 Manihot esculenta HOM05D000522 ORTHO05D004380 5.1e-15 84.3 87 54.0
A03p43630 Brassica napus HOM05D000522 ORTHO05D004380 8.7e-15 83.6 87 54.0
BcaB03g14587 Brassica carinata HOM05D000522 ORTHO05D004380 1.1e-14 83.2 87 52.9
HanXRQChr10g0317641 Helianthus annuus HOM05D000522 ORTHO05D004380 1.5e-14 82.8 90 53.3
HanXRQChr10g0317691 Helianthus annuus HOM05D000522 ORTHO05D024576 1.9e-14 82.4 90 53.3
HanXRQChr10g0317741 Helianthus annuus HOM05D000522 ORTHO05D004380 1.9e-14 82.4 90 53.3
HanXRQChr13g0424731 Helianthus annuus HOM05D000522 ORTHO05D004380 1.9e-14 82.4 90 53.3
Thhalv10002535m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 4.3e-14 81.3 88 55.7
Lj7A644G12 Lonicera japonica HOM05D000522 ORTHO05D004380 4.3e-14 81.3 90 51.1
Lj7C643G7 Lonicera japonica HOM05D000522 ORTHO05D004380 4.3e-14 81.3 90 51.1
Aa31LG8G11100 Aethionema arabicum HOM05D000522 ORTHO05D004380 5.6e-14 80.9 87 52.9
Ciclev10008327m.g Citrus clementina HOM05D000522 ORTHO05D004380 5.6e-14 80.9 85 54.1
AT3G24360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 7.3e-14 80.5 92 48.9
Potri.006G155700 Populus trichocarpa HOM05D000522 ORTHO05D004380 1.2e-13 79.7 87 51.7
Potri.006G156350 Populus trichocarpa HOM05D000522 ORTHO05D004380 1.2e-13 79.7 87 51.7
Sabra06G0123500 Salix brachista HOM05D000522 ORTHO05D004380 1.2e-13 79.7 86 51.2
ECA234G1779 Erigeron canadensis HOM05D000522 ORTHO05D004380 2.1e-13 79.0 91 49.5
Cpa.g.sc23.137 Carica papaya HOM05D000522 ORTHO05D004380 2.8e-13 78.6 87 49.4
Cfa003289 Carpinus fangiana HOM05D000522 ORTHO05D004380 2.8e-13 78.6 87 50.6
CsaV3_2G002430 Cucumis sativus L. HOM05D000522 ORTHO05D004380 3.6e-13 78.2 87 49.4
QL02p086017 Quercus lobata HOM05D000522 ORTHO05D004380 3.6e-13 78.2 87 51.7
Atru.chr7.1299 Acer truncatum HOM05D000522 ORTHO05D004380 4.7e-13 77.8 87 49.4
CiPaw.04G167000 Carya illinoinensis HOM05D000522 ORTHO05D004380 4.7e-13 77.8 87 50.6
CANSAT56G3220 Cannabis sativa HOM05D000522 ORTHO05D004380 6.2e-13 77.4 87 50.6
CANSAT56G3667 Cannabis sativa HOM05D000522 ORTHO05D004380 6.2e-13 77.4 87 50.6
Nitab4.5_0008529g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 6.2e-13 77.4 92 46.7
Prupe.7G227300 Prunus persica HOM05D000522 ORTHO05D004380 6.2e-13 77.4 87 50.6
RcHm_v2.0_Chr2g0091031 Rosa chinensis HOM05D000522 ORTHO05D004380 6.2e-13 77.4 87 50.6
MELO3C004545.2 Cucumis melo HOM05D000522 ORTHO05D004380 1.1e-12 76.6 87 47.1
unitig_46.g18395 Utricularia gibba HOM05D000522 ORTHO05D004380 1.4e-12 76.3 92 46.7
CSS0022610 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 1.8e-12 75.9 82 48.8
MD15G1189500 Malus domestica HOM05D000522 ORTHO05D004380 1.8e-12 75.9 87 49.4
THA.LOC104808747 Tarenaya hassleriana HOM05D000522 ORTHO05D004380 2.4e-12 75.5 91 49.5
AL3G39830 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 3.1e-12 75.1 92 46.7
Haze_25684 Corylus avellana HOM05D000522 ORTHO05D004380 3.1e-12 75.1 87 48.3
Dinv41579 Davidia involucrata HOM05D000993 ORTHO05D004380 3.1e-12 75.1 87 47.1
MD02G1056500 Malus domestica HOM05D000522 ORTHO05D004380 3.1e-12 75.1 87 49.4
Nitab4.5_0002705g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 3.1e-12 75.1 92 44.6
Nitab4.5_0008625g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 3.1e-12 75.1 92 45.7
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 4.0e-12 74.7 92 46.7
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 4.0e-12 74.7 92 46.7
Peaxi162Scf00552g00512 Petunia axillaris HOM05D000522 ORTHO05D004380 4.0e-12 74.7 92 45.7
Sed0002571 Sechium edule HOM05D000522 ORTHO05D004380 4.0e-12 74.7 87 48.3
Sed0015283 Sechium edule HOM05D000522 ORTHO05D004380 4.0e-12 74.7 86 47.7
ClCG11G002610 Citrullus lanatus HOM05D000522 ORTHO05D004380 5.3e-12 74.3 85 47.1
Phvul.002G314900 Phaseolus vulgaris HOM05D000522 ORTHO05D004380 5.3e-12 74.3 87 48.3
Actinidia07420 Actinidia chinensis HOM05D000522 ORTHO05D004380 6.9e-12 73.9 87 47.1
Oeu058085.3 Olea europaea HOM05D000522 ORTHO05D004380 6.9e-12 73.9 86 47.7
CAN.G32.1 Capsicum annuum HOM05D000522 ORTHO05D004380 9.0e-12 73.6 86 47.7
Cc06_g09360 Coffea canephora HOM05D000522 ORTHO05D004380 9.0e-12 73.6 86 46.5
FvH4_1g05350 Fragaria vesca HOM05D000522 ORTHO05D004380 9.0e-12 73.6 87 49.4
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 9.0e-12 73.6 87 49.4
QL02p086054 Quercus lobata HOM05D000522 ORTHO05D004380 9.0e-12 73.6 90 46.7
Thecc.09G114500 Theobroma cacao HOM05D000522 ORTHO05D004380 9.0e-12 73.6 91 45.1
Nitab4.5_0002363g0030 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.2e-11 73.2 90 45.6
Solyc05g018417.1 Solanum lycopersicum HOM05D000522 ORTHO05D004380 1.2e-11 73.2 87 48.3
GSVIVG01015428001 Vitis vinifera HOM05D000522 ORTHO05D004380 1.2e-11 73.2 86 46.5
CAN.G300.3 Capsicum annuum HOM05D000522 ORTHO05D004380 1.5e-11 72.8 87 48.3
Eucgr.C01076 Eucalyptus grandis HOM05D000522 ORTHO05D004380 2.0e-11 72.4 87 47.1
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.0e-11 72.4 87 48.3
Actinidia20339 Actinidia chinensis HOM05D000522 ORTHO05D004380 2.6e-11 72.0 85 49.4
FAN28G2217 Fragaria x ananassa HOM05D000522 ORTHO05D004380 2.6e-11 72.0 87 48.3
Glyma.08G040000 Glycine max HOM05D000522 ORTHO05D004380 2.6e-11 72.0 92 43.5
Duzib150G0749 Durio zibethinus HOM05D000522 ORTHO05D004380 3.4e-11 71.6 87 46.0
CSS0032661 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 4.4e-11 71.2 86 47.7
COL.COLO4_34881 Corchorus olitorius HOM05D000522 ORTHO05D004380 4.4e-11 71.2 87 48.3
Duzib187G0776 Durio zibethinus HOM05D000522 ORTHO05D004380 4.4e-11 71.2 87 46.0
Lsat_1_v5_gn_5_100220 Lactuca sativa HOM05D000522 ORTHO05D004380 5.8e-11 70.9 90 46.7
Rhsim03G0244700 Rhododendron simsii HOM05D000522 ORTHO05D004380 5.8e-11 70.9 87 44.8
Sopen07g011860 Solanum pennellii HOM05D000522 ORTHO05D004380 5.8e-11 70.9 92 43.5
VMungo0251G1337 Vigna mungo HOM05D000522 ORTHO05D004380 7.6e-11 70.5 92 43.5
Gohir.A13G196800 Gossypium hirsutum HOM05D000522 ORTHO05D004380 9.9e-11 70.1 87 46.0
Lsat_1_v5_gn_8_94761 Lactuca sativa HOM05D000522 ORTHO05D004380 9.9e-11 70.1 90 43.3
Peaxi162Scf00560g00617 Petunia axillaris HOM05D000522 ORTHO05D004380 9.9e-11 70.1 107 39.3
SalBow1G3152 Salvia bowleyana HOM05D000522 ORTHO05D004380 9.9e-11 70.1 92 42.4
arahy.Tifrunner.gnm1.ann1.E6IMKI Arachis hypogaea HOM05D000522 ORTHO05D004380 1.3e-10 69.7 87 44.8
DCAR_012089 Daucus carota HOM05D000522 ORTHO05D004380 1.3e-10 69.7 92 44.6
Lalb_Chr05g0222651 Lupinus albus HOM05D000522 ORTHO05D004380 1.3e-10 69.7 87 44.8
vmacro06199 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.7e-10 69.3 87 43.7
arahy.Tifrunner.gnm1.ann1.R702JB Arachis hypogaea HOM05D000522 ORTHO05D004380 2.2e-10 68.9 87 44.8
Gohir.D13G202100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 2.2e-10 68.9 87 44.8
Gorai.013G231000 Gossypium raimondii HOM05D000522 ORTHO05D004380 2.2e-10 68.9 87 44.8
MBI04_g25412_MAGBIO Magnolia biondii HOM05D000522 ORTHO05D004380 2.2e-10 68.9 85 44.7
TWI63G0481 Tripterygium wilfordii HOM05D000522 ORTHO05D004380 2.9e-10 68.6 87 42.5
Glyma.05G232600 Glycine max HOM05D000522 ORTHO05D004380 3.8e-10 68.2 87 46.0
Nn8g39261 Nelumbo nucifera HOM05D000522 ORTHO05D004380 3.8e-10 68.2 87 43.7
HanXRQChr05g0138321 Helianthus annuus HOM05D000522 ORTHO05D004380 4.9e-10 67.8 92 41.3
MSTRG.26353 Avicennia marina HOM05D000522 ORTHO05D004380 6.4e-10 67.4 90 43.3
ECA236G2754 Erigeron canadensis HOM05D000522 ORTHO05D004380 8.4e-10 67.0 90 43.3
SGA_v2.0_scaffold183G39892 Striga asiatica HOM05D000522 ORTHO05D004380 8.4e-10 67.0 92 41.3
Aqoxy7G03774 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 1.4e-09 66.2 85 43.5
Gohir.D07G004100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 1.4e-09 66.2 87 42.5
Gorai.001G003700 Gossypium raimondii HOM05D000522 ORTHO05D004380 1.4e-09 66.2 87 42.5
TAR383G0974 Trochodendron aralioides HOM05D000522 ORTHO05D004380 1.4e-09 66.2 87 41.4
CDE02G2108 Ceratophyllum demersum HOM05D000522 ORTHO05D004380 1.9e-09 65.9 90 41.1
Duzib168G0832 Durio zibethinus HOM05D000522 ORTHO05D004380 1.9e-09 65.9 87 43.7
Migut.K00465 Erythranthe guttata HOM05D000522 ORTHO05D004380 1.9e-09 65.9 91 41.8
Os06g0594100 Oryza sativa ssp. japonica HOM05D000522 ORTHO05D004380 1.9e-09 65.9 91 41.8
Hund09185 Selenicereus undatus HOM05D000522 ORTHO05D004380 1.9e-09 65.9 83 42.2
Zm00001eb385980 Zea mays HOM05D000522 ORTHO05D004380 1.9e-09 65.9 90 43.3
AUR62033399 Chenopodium quinoa HOM05D000522 ORTHO05D004380 2.4e-09 65.5 87 44.8
Gohir.A07G003600 Gossypium hirsutum HOM05D000522 ORTHO05D004380 2.4e-09 65.5 87 42.5
ATR0037G022 Amborella trichopoda HOM05D000522 ORTHO05D004380 4.2e-09 64.7 85 42.4
Psat7g012360 Pisum sativum HOM05D000522 ORTHO05D004380 4.2e-09 64.7 85 47.1
PGR102G1361 Punica granatum HOM05D000522 ORTHO05D004380 4.2e-09 64.7 87 46.0
vmacro06197 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 5.4e-09 64.3 87 41.4
PSO063G3875 Papaver somniferum HOM05D000522 ORTHO05D004380 7.1e-09 63.9 84 42.9
EL10Ac8g18536 Beta vulgaris HOM05D000522 ORTHO05D004380 9.3e-09 63.5 87 41.4
Ca_17345_v3 Cicer arietinum L. HOM05D000522 ORTHO05D004380 1.2e-08 63.2 87 43.7
Eucgr.C04134 Eucalyptus grandis HOM05D000522 ORTHO05D004380 1.2e-08 63.2 85 41.2
PSO782G3947 Papaver somniferum HOM05D000522 ORTHO05D004380 1.2e-08 63.2 84 42.9
AUR62011027 Chenopodium quinoa HOM05D000522 ORTHO05D004380 2.1e-08 62.4 87 42.5
Lj4g0021382 Lotus japonicus HOM05D000522 ORTHO05D004380 2.1e-08 62.4 87 43.7
Aqoxy7G01827 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 2.7e-08 62.0 85 42.4
Psat7g014120 Pisum sativum HOM05D000522 ORTHO05D004380 2.7e-08 62.0 85 43.5
Lalb_Chr16g0387971 Lupinus albus HOM05D000522 ORTHO05D004380 3.5e-08 61.6 89 42.7
Hund26120 Selenicereus undatus HOM05D000522 ORTHO05D004380 3.5e-08 61.6 89 41.6
Medtr8g103840 Medicago truncatula HOM05D000522 ORTHO05D004380 4.6e-08 61.2 85 42.4
PSO210G0429 Papaver somniferum HOM05D000522 ORTHO05D004380 7.8e-08 60.5 87 37.9
TPR.G21700 Trifolium pratense HOM05D000522 ORTHO05D004380 1.0e-07 60.1 85 41.2
AUR62033413 Chenopodium quinoa HOM05D000522 ORTHO05D004380 6.6e-07 57.4 87 35.6
HPP92_006445 Vanilla planifolia HOM05D000522 ORTHO05D004380 6.6e-07 57.4 84 39.3
AUR62011039 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.5e-06 56.2 91 34.1
AUR62033410 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.5e-06 56.2 91 34.1
Mapoly0126s0026 Marchantia polymorpha HOM05D000522 ORTHO05D004380 3.3e-06 55.1 90 36.7
vmacro06198 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 7.3e-06 53.9 79 35.4


User provided reference genes

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