Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p06720 Brassica napus HOM05D002250 ORTHO05D027706 2.5e-56 221.9 109 100.0
BraA04t16677Z Brassica rapa HOM05D002250 ORTHO05D027706 2.5e-56 221.9 109 100.0
BraA08t32687Z Brassica rapa HOM05D002250 ORTHO05D027706 2.5e-56 221.9 109 100.0
BcaB04g20503 Brassica carinata HOM05D002250 ORTHO05D027706 6.1e-31 137.5 95 74.7
BcaB01g05751 Brassica carinata HOM05D002250 ORTHO05D002393 3.7e-20 101.7 56 91.1
BcaB01g05963 Brassica carinata HOM05D002250 ORTHO05D002393 3.7e-20 101.7 56 91.1
C03p02770 Brassica napus HOM05D002250 ORTHO05D002393 3.7e-20 101.7 56 91.1
BolC3t12831H Brassica oleracea HOM05D002250 ORTHO05D002393 3.7e-20 101.7 56 91.1
BraA03t09605Z Brassica rapa HOM05D002250 ORTHO05D002393 3.7e-20 101.7 56 91.1
A03p02440 Brassica napus HOM05D002250 ORTHO05D002393 1.8e-19 99.4 56 89.3
AL6G15650 Arabidopsis lyrata HOM05D002250 ORTHO05D002393 3.5e-18 95.1 56 85.7
Carub.0006s0466 Capsella rubella HOM05D002250 ORTHO05D002393 3.5e-18 95.1 56 85.7
CARHR207510 Cardamine hirsuta HOM05D002250 ORTHO05D002393 3.5e-18 95.1 56 85.7
BcaNung07047 Brassica carinata HOM05D002250 ORTHO05D002393 5.9e-18 94.4 51 92.2
Thhalv10014023m.g Eutrema salsugineum HOM05D002250 ORTHO05D002393 7.8e-18 94.0 56 83.9
AT5G05760 Arabidopsis thaliana HOM05D002250 ORTHO05D002393 1.7e-17 92.8 56 82.1
Aa31LG11G6770 Aethionema arabicum HOM05D002250 ORTHO05D002393 2.3e-17 92.4 56 82.1
Sp6g37140 Schrenkiella parvula HOM05D002250 ORTHO05D002393 2.3e-17 92.4 56 82.1
BcaB02g11438 Brassica carinata HOM05D002250 ORTHO05D092131 6.6e-17 90.9 45 93.3
THA.LOC104816556 Tarenaya hassleriana HOM05D002250 ORTHO05D002393 3.3e-16 88.6 56 80.4
MD01G1149000 Malus domestica HOM05D002250 ORTHO05D002393 4.0e-14 81.6 60 68.3
Gohir.A10G233800 Gossypium hirsutum HOM05D002250 ORTHO05D002393 8.9e-14 80.5 60 68.3
arahy.Tifrunner.gnm1.ann1.JV7TC8 Arachis hypogaea HOM05D002250 ORTHO05D002393 2.6e-13 79.0 66 62.1
arahy.Tifrunner.gnm1.ann1.SV3ZRB Arachis hypogaea HOM05D002250 ORTHO05D002393 2.6e-13 79.0 66 62.1
Gohir.D10G246100 Gossypium hirsutum HOM05D002250 ORTHO05D002393 2.6e-13 79.0 52 71.2
Gorai.011G283800 Gossypium raimondii HOM05D002250 ORTHO05D002393 2.6e-13 79.0 52 71.2
HanXRQChr12g0370551 Helianthus annuus HOM05D002250 ORTHO05D002393 2.6e-13 79.0 60 65.0
COL.COLO4_25632 Corchorus olitorius HOM05D002250 ORTHO05D002393 4.4e-13 78.2 60 66.7
Actinidia13923 Actinidia chinensis HOM05D002250 ORTHO05D002393 5.8e-13 77.8 56 64.3
MSTRG.8319 Avicennia marina HOM05D002250 ORTHO05D002393 5.8e-13 77.8 56 71.4
Duzib114G1007 Durio zibethinus HOM05D002250 ORTHO05D002393 5.8e-13 77.8 60 66.7
Potri.010G191100 Populus trichocarpa HOM05D002250 ORTHO05D002393 5.8e-13 77.8 60 63.3
Thecc.10G023000 Theobroma cacao HOM05D002250 ORTHO05D002393 5.8e-13 77.8 60 66.7
Migut.F01414 Erythranthe guttata HOM05D002250 ORTHO05D002393 7.5e-13 77.4 56 71.4
Manes.07G127200 Manihot esculenta HOM05D002250 ORTHO05D002393 7.5e-13 77.4 60 65.0
Ciclev10031758m.g Citrus clementina HOM05D002250 ORTHO05D002393 9.8e-13 77.0 60 63.3
Lsat_1_v5_gn_8_12440 Lactuca sativa HOM05D002250 ORTHO05D002393 9.8e-13 77.0 60 65.0
Lj8A70T41 Lonicera japonica HOM05D002250 ORTHO05D002393 9.8e-13 77.0 63 63.5
CANSAT56G0808 Cannabis sativa HOM05D002250 ORTHO05D002393 1.3e-12 76.6 60 65.0
Phvul.008G225400 Phaseolus vulgaris HOM05D002250 ORTHO05D002393 1.3e-12 76.6 60 63.3
GSVIVG01032856001 Vitis vinifera HOM05D002250 ORTHO05D002393 1.3e-12 76.6 60 63.3
Prupe.2G247700 Prunus persica HOM05D002250 ORTHO05D002393 2.2e-12 75.9 60 65.0
RcHm_v2.0_Chr1g0369761 Rosa chinensis HOM05D002250 ORTHO05D002393 2.2e-12 75.9 56 66.1
CiPaw.01G297000 Carya illinoinensis HOM05D002250 ORTHO05D002393 2.9e-12 75.5 56 62.5
Haze_17198 Corylus avellana HOM05D002250 ORTHO05D002393 2.9e-12 75.5 60 63.3
Dinv20972 Davidia involucrata HOM05D000895 ORTHO05D002393 2.9e-12 75.5 60 63.3
Dinv21033 Davidia involucrata HOM05D000895 ORTHO05D002393 2.9e-12 75.5 60 63.3
FAN06G1269 Fragaria x ananassa HOM05D002250 ORTHO05D002393 3.7e-12 75.1 60 63.3
Rhsim09G0173400 Rhododendron simsii HOM05D002250 ORTHO05D002393 3.7e-12 75.1 60 61.7
vmacro10059 Vaccinium macrocarpon HOM05D002250 ORTHO05D002393 3.7e-12 75.1 60 61.7
VMungo0647G0800 Vigna mungo HOM05D002250 ORTHO05D002393 4.9e-12 74.7 60 61.7
Dinv34410 Davidia involucrata HOM05D002250 ORTHO05D002393 6.4e-12 74.3 60 60.0
Sed0013961 Sechium edule HOM05D002250 ORTHO05D002393 1.1e-11 73.6 60 60.0
Sc11g0007210 Simmondsia chinensis HOM05D002250 ORTHO05D002393 1.1e-11 73.6 50 68.0
Cpa.g.sc19.208 Carica papaya HOM05D002250 ORTHO05D002393 1.4e-11 73.2 60 61.7
Sabra10G0147100 Salix brachista HOM05D002250 ORTHO05D002393 1.4e-11 73.2 60 60.0
SalBow6G5206 Salvia bowleyana HOM05D002250 ORTHO05D002393 1.4e-11 73.2 56 64.3
Atru.chr12.6_Atru.chr12.7 Acer truncatum HOM05D002250 ORTHO05D002393 1.9e-11 72.8 60 60.0
FvH4_7g24180 Fragaria vesca HOM05D002250 ORTHO05D002393 1.9e-11 72.8 60 61.7
FAN01G0378 Fragaria x ananassa HOM05D002250 ORTHO05D002393 1.9e-11 72.8 60 61.7
FAN03G0360 Fragaria x ananassa HOM05D002250 ORTHO05D002393 1.9e-11 72.8 60 61.7
FAN10G0698 Fragaria x ananassa HOM05D002250 ORTHO05D002393 1.9e-11 72.8 60 61.7
MELO3C025172.2 Cucumis melo HOM05D002250 ORTHO05D002393 2.4e-11 72.4 60 58.3
Nn2g11427 Nelumbo nucifera HOM05D002250 ORTHO05D002393 2.4e-11 72.4 60 60.0
Nitab4.5_0001346g0010 Nicotiana tabacum HOM05D002250 ORTHO05D002393 2.4e-11 72.4 56 60.7
PSO339G0485 Papaver somniferum HOM05D002250 ORTHO05D002393 3.2e-11 72.0 52 63.5
PSO801G0669 Papaver somniferum HOM05D002250 ORTHO05D002393 3.2e-11 72.0 52 63.5
CSS0005321 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 4.1e-11 71.6 48 68.8
Nitab4.5_0000802g0170 Nicotiana tabacum HOM05D002250 ORTHO05D002393 4.1e-11 71.6 56 60.7
Peaxi162Scf01313g00119 Petunia axillaris HOM05D002250 ORTHO05D002393 4.1e-11 71.6 57 61.4
TAR633G1402 Trochodendron aralioides HOM05D002250 ORTHO05D002393 4.1e-11 71.6 60 60.0
Lalb_Chr17g0346691 Lupinus albus HOM05D002250 ORTHO05D002393 5.4e-11 71.2 60 58.3
Glyma.02G255700 Glycine max HOM05D002250 ORTHO05D002393 7.0e-11 70.9 60 60.0
DCAR_011799 Daucus carota HOM05D006949 ORTHO05D008621 9.2e-11 70.5 56 64.3
MBI14_g09424_MAGBIO Magnolia biondii HOM05D002250 ORTHO05D002393 9.2e-11 70.5 60 56.7
MBI18_g28884_MAGBIO Magnolia biondii HOM05D002250 ORTHO05D002393 9.2e-11 70.5 60 56.7
Hund13839 Selenicereus undatus HOM05D002250 ORTHO05D002393 9.2e-11 70.5 54 57.4
ClCG07G004070 Citrullus lanatus HOM05D002250 ORTHO05D002393 2.0e-10 69.3 60 56.7
LjContig00357g0020435 Lotus japonicus HOM05D002250 ORTHO05D002393 2.7e-10 68.9 60 58.3
Sed0023487 Sechium edule HOM05D002250 ORTHO05D002393 2.7e-10 68.9 56 55.4
ATR0618G234 Amborella trichopoda HOM05D002250 ORTHO05D002393 3.5e-10 68.6 60 55.0
Dinv13744 Davidia involucrata HOM05D002250 ORTHO05D002393 3.5e-10 68.6 54 63.0
Solyc07g054140.3 Solanum lycopersicum HOM05D002250 ORTHO05D002393 3.5e-10 68.6 52 57.7
PGSC0003DMG400018386 Solanum tuberosum HOM05D002250 ORTHO05D002393 3.5e-10 68.6 52 57.7
Glyma.U031123 Glycine max HOM05D002250 ORTHO05D002393 6.0e-10 67.8 54 63.0
CsaV3_5G008990 Cucumis sativus L. HOM05D002250 ORTHO05D002393 7.8e-10 67.4 60 55.0
Sopen07g028060 Solanum pennellii HOM05D002250 ORTHO05D002393 7.8e-10 67.4 52 57.7
TWI09G0841 Tripterygium wilfordii HOM05D002250 ORTHO05D002393 1.0e-09 67.0 56 60.7
Aqoxy4G02625 Aquilegia oxysepala HOM05D002250 ORTHO05D002393 1.3e-09 66.6 56 60.7
Eucgr.G03043 Eucalyptus grandis HOM05D002250 ORTHO05D002393 1.3e-09 66.6 60 53.3
CAN.G248.27 Capsicum annuum HOM05D002250 ORTHO05D002393 1.1e-08 63.5 63 52.4
Medtr5g093600 Medicago truncatula HOM05D002250 ORTHO05D002393 1.1e-08 63.5 60 53.3
AUR62022860 Chenopodium quinoa HOM05D002250 ORTHO05D002393 1.9e-08 62.8 54 55.6
AUR62012228 Chenopodium quinoa HOM05D002250 ORTHO05D002393 2.5e-08 62.4 54 57.4
EL10Ac2g04806 Beta vulgaris HOM05D002250 ORTHO05D002393 7.3e-08 60.8 54 53.7
Psat2g012720 Pisum sativum HOM05D002250 ORTHO05D002393 4.7e-07 58.2 60 48.3
Ah.16g103310 Amaranthus hybridus HOM05D002250 ORTHO05D002393 8.0e-07 57.4 54 48.1
Lj1g0015322 Lotus japonicus HOM05D002250 ORTHO05D002393 2.3e-06 55.8 66 48.5
Phvul.009G098500 Phaseolus vulgaris HOM05D002250 ORTHO05D002393 6.8e-06 54.3 65 47.7


User provided reference genes

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