Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 2.8e-166 588.6 308 100.0
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 4.1e-165 584.7 308 99.4
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 2.5e-162 575.5 308 98.1
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 2.5e-162 575.5 308 98.1
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 2.5e-162 575.5 308 98.1
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 1.7e-147 526.2 308 89.9
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.2e-143 513.5 309 86.4
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 7.5e-143 510.8 308 87.0
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 7.5e-143 510.8 308 87.0
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 1.3e-142 510.0 306 86.9
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 4.9e-142 508.1 311 85.5
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 1.8e-141 506.1 312 85.9
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 3.3e-138 495.4 307 85.0
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.5e-135 486.5 308 84.1
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 3.7e-134 481.9 307 83.4
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.9e-133 479.6 306 83.0
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 5.4e-133 478.0 306 82.7
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 1.2e-129 466.8 306 81.0
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 1.5e-122 443.4 315 74.3
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.5e-114 416.8 309 72.8
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 1.9e-101 373.2 306 67.0
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 2.1e-100 369.8 320 63.1
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.8e-99 366.7 322 61.5
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 4.3e-98 362.1 321 62.6
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 6.2e-97 358.2 320 61.6
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.4e-96 357.1 318 59.7
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.4e-96 357.1 319 60.8
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 2.4e-96 356.3 336 59.5
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.2e-95 354.0 323 60.1
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 2.6e-95 352.8 319 61.1
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 3.4e-95 352.4 319 59.2
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 5.8e-95 351.7 318 60.1
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 7.6e-95 351.3 322 59.9
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 7.6e-95 351.3 319 59.2
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 9.9e-95 350.9 318 60.7
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 2.9e-94 349.4 318 59.7
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 6.4e-94 348.2 324 58.6
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 1.1e-93 347.4 321 61.1
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 1.4e-93 347.1 317 58.4
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.4e-93 347.1 319 59.6
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 1.4e-93 347.1 325 59.4
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.4e-93 346.3 316 59.2
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.4e-93 346.3 319 58.6
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 3.2e-93 345.9 321 59.8
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 3.2e-93 345.9 306 60.1
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 5.5e-93 345.1 313 61.0
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 7.1e-93 344.7 319 59.2
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 7.1e-93 344.7 313 59.1
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 9.3e-93 344.4 318 60.7
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 9.3e-93 344.4 322 59.3
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.6e-92 343.6 317 57.7
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 1.6e-92 343.6 324 58.6
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.7e-92 342.8 309 61.2
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 2.7e-92 342.8 324 58.0
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 4.6e-92 342.0 312 62.2
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 4.6e-92 342.0 317 57.7
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.8e-91 340.1 319 59.2
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.3e-91 339.7 315 58.4
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 2.3e-91 339.7 325 57.5
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 3.0e-91 339.3 315 57.5
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 3.0e-91 339.3 320 58.8
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 3.0e-91 339.3 320 56.2
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 3.9e-91 339.0 320 59.4
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 5.1e-91 338.6 310 58.1
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 6.7e-91 338.2 321 58.3
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 8.7e-91 337.8 325 57.2
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 3.3e-90 335.9 328 54.9
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 5.6e-90 335.1 319 57.1
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 9.6e-90 334.3 341 55.1
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 2.8e-89 332.8 320 59.1
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 4.8e-89 332.0 316 58.2
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 4.8e-89 332.0 306 60.5
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 9.0e-88 327.8 315 57.1
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.5e-87 327.0 359 52.6
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 4.5e-87 325.5 326 56.4
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 5.8e-87 325.1 377 50.9
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 7.6e-87 324.7 317 55.2
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 1.0e-86 324.3 316 56.3
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 3.8e-86 322.4 334 54.8
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 2.5e-85 319.7 311 56.3
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 4.2e-85 318.9 299 59.2
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 4.2e-85 318.9 327 55.7
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 7.1e-85 318.2 306 55.9
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 7.1e-85 318.2 315 55.6
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 7.1e-85 318.2 315 55.6
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 7.9e-84 314.7 322 55.3
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 1.8e-83 313.5 322 54.3
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 3.0e-83 312.8 327 53.8
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 1.1e-82 310.8 318 55.0
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 1.9e-82 310.1 339 52.2
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 4.3e-82 308.9 375 50.7
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 7.4e-82 308.1 324 54.0
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 2.2e-81 306.6 317 53.3
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.8e-81 306.2 265 62.3
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.4e-79 299.3 311 54.0
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 1.4e-77 293.9 313 54.0
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.9e-77 293.5 311 52.1
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 9.4e-77 291.2 369 48.0
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.6e-76 290.4 269 59.1
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 4.6e-76 288.9 312 53.8
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 4.6e-76 288.9 299 55.2
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 1.8e-75 287.0 309 52.8
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 2.8e-73 279.6 320 51.6
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 3.7e-73 279.3 315 49.8
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 2.4e-72 276.6 251 59.0
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 3.8e-70 269.2 209 67.5
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 8.8e-67 258.1 297 52.2
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.6e-63 246.5 348 47.4
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 5.9e-63 245.4 321 50.5
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 9.4e-61 238.0 305 45.2
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.8e-59 233.8 287 48.4
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 2.3e-59 233.4 317 43.2
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 2.3e-59 233.4 294 45.9
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 3.0e-59 233.0 317 46.7
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.2e-55 221.1 314 46.2
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 6.5e-54 215.3 274 46.7
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 4.5e-47 192.6 321 40.2
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 8.5e-46 188.3 178 51.1
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 3.4e-42 176.4 110 81.8
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 5.4e-40 169.1 175 48.6
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 7.5e-34 148.7 105 70.5
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 8.3e-33 145.2 110 66.4
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 3.1e-32 143.3 135 60.0
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 5.4e-32 142.5 176 47.2
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.5e-31 139.4 262 39.3
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 1.1e-29 134.8 240 37.9
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 1.2e-23 114.8 192 45.3
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.7e-17 94.4 68 64.7
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.7e-14 84.3 103 51.5
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 3.9e-14 83.2 46 84.8
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 3.9e-14 83.2 46 84.8
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 3.9e-14 83.2 46 84.8
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 1.9e-13 80.9 54 74.1
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 2.5e-13 80.5 67 58.2
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.3e-13 80.1 105 47.6
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 5.6e-13 79.3 45 82.2
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 8.9e-11 72.0 54 66.7
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 1.3e-09 68.2 114 39.5
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 4.1e-08 63.2 51 64.7
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 1.0e-06 58.5 53 56.6
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.0e-06 57.0 76 42.1


User provided reference genes

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