Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 6.2e-126 454.1 229 100.0
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 98.7
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 99.1
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 98.7
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 98.3
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 95.6
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 95.2
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 95.2
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 95.2
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 95.2
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 95.2
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 95.2
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 94.8
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 6.6e-120 434.1 238 91.6
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.1e-119 433.3 229 93.9
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.9e-119 432.6 229 92.6
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 8.1e-118 427.2 256 85.2
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 89.1
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 89.1
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.3e-112 409.8 227 88.1
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 5.1e-112 407.9 227 86.3
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 87.3
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 87.2
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 86.8
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.5e-111 406.4 227 86.3
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 1.9e-111 406.0 229 87.3
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 87.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 85.0
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.3e-111 405.2 227 86.8
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 3.3e-111 405.2 227 87.7
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 3.3e-111 405.2 229 86.9
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 3.3e-111 405.2 229 86.9
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 4.3e-111 404.8 229 86.5
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 4.3e-111 404.8 227 87.2
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 4.3e-111 404.8 227 86.8
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 4.3e-111 404.8 227 85.0
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 5.6e-111 404.4 227 85.9
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.6e-111 404.4 226 87.6
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 5.6e-111 404.4 226 87.6
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 9.6e-111 403.7 227 87.2
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 9.6e-111 403.7 227 87.2
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.3e-110 403.3 229 86.9
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.3e-110 403.3 227 86.3
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 1.6e-110 402.9 229 86.9
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 1.6e-110 402.9 227 86.8
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.6e-110 402.9 227 87.2
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 1.6e-110 402.9 229 86.9
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.1e-110 402.5 226 87.2
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.1e-110 402.5 229 86.0
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.8e-110 402.1 227 86.3
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 85.9
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 87.2
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 86.3
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 85.9
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 86.3
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 4.8e-110 401.4 227 86.3
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 6.2e-110 401.0 227 86.3
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 8.1e-110 400.6 227 85.9
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.1e-109 400.2 227 85.9
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.1e-109 400.2 227 86.8
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.8e-109 399.4 227 85.9
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.8e-109 399.4 227 86.3
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.8e-109 399.4 229 85.6
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 2.4e-109 399.1 227 85.9
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 3.1e-109 398.7 227 85.5
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 3.1e-109 398.7 227 84.6
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 5.3e-109 397.9 229 84.7
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 9.0e-109 397.1 227 84.1
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 9.0e-109 397.1 229 84.3
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.5e-108 396.4 229 83.4
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 1.5e-108 396.4 227 84.1
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.0e-108 396.0 227 84.6
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.0e-108 396.0 227 83.7
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 3.4e-108 395.2 227 84.6
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.5e-108 394.8 227 83.3
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 4.5e-108 394.8 227 83.7
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 5.8e-108 394.4 227 83.3
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 7.6e-108 394.0 229 83.4
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 2.9e-107 392.1 229 83.0
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 2.5e-106 389.0 229 87.8
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.5e-106 389.0 227 81.9
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 9.3e-106 387.1 227 83.3
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.6e-105 386.3 229 82.1
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 2.1e-105 386.0 227 81.9
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 3.5e-105 385.2 229 81.7
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 4.6e-105 384.8 227 82.8
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.3e-104 383.3 227 81.9
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 2.3e-104 382.5 227 79.3
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 3.0e-104 382.1 220 84.1
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.1e-103 380.2 227 83.7
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 3.3e-103 378.6 229 79.0
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 9.6e-103 377.1 229 78.6
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 1.3e-102 376.7 227 81.5
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 2.1e-102 375.9 226 79.2
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 3.7e-102 375.2 227 82.4
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 6.2e-102 374.4 226 79.2
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 3.1e-101 372.1 227 78.4
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.7e-99 366.3 227 77.1
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 6.7e-96 354.4 203 86.2
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 1.5e-95 353.2 209 81.8
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 2.5e-95 352.4 202 85.1
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 5.7e-95 351.3 227 74.0
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.2e-94 349.4 227 73.1
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 3.7e-94 348.6 204 83.3
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 8.2e-94 347.4 227 76.7
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 9.0e-93 344.0 200 81.5
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 3.4e-92 342.0 227 71.4
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.3e-91 340.1 190 88.4
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 1.7e-91 339.7 191 87.4
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.2e-91 339.3 226 72.1
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.2e-91 339.3 226 72.1
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 5.0e-91 338.2 190 86.8
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 6.5e-91 337.8 200 82.0
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.9e-90 336.3 189 86.2
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 3.2e-90 335.5 234 72.6
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 4.2e-90 335.1 197 84.8
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 2.7e-89 332.4 187 87.2
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 6.1e-89 331.3 185 88.6
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 3.0e-88 328.9 231 73.6
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 7.4e-87 324.3 226 68.1
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 9.1e-85 317.4 185 83.8
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 2.0e-84 316.2 227 71.4
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.1e-81 304.7 162 93.8
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 2.3e-80 302.8 226 68.1
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.7e-75 286.6 162 85.8
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 2.9e-75 285.8 164 84.8
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 1.6e-73 280.0 160 84.4
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.8e-72 276.6 357 47.1
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.0e-59 231.9 131 86.3
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 4.4e-55 218.8 154 68.2
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.5e-52 209.1 120 83.3
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.4e-38 161.8 140 62.9
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.4e-30 135.2 69 95.7
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 1.3e-22 110.9 62 75.8
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 2.1e-17 93.6 152 40.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.8e-16 90.5 124 46.8
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 1.2e-15 87.8 45 91.1
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.2e-14 83.6 81 51.9
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 3.2e-13 79.7 70 54.3
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 1.3e-11 74.3 64 56.2
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 1.1e-08 64.7 51 62.7
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 9.0e-08 61.6 82 47.6
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 1.3e-06 57.8 26 96.2


User provided reference genes

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