Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p05340 Brassica napus HOM05D003146 ORTHO05D001819 1.1e-90 336.7 178 100.0
BraSC267t45946Z Brassica rapa HOM05D003146 ORTHO05D001819 1.1e-90 336.7 178 100.0
BolC8t47376H Brassica oleracea HOM05D003146 ORTHO05D001819 4.3e-90 334.7 178 98.9
BcaB04g17471 Brassica carinata HOM05D003146 ORTHO05D001819 1.4e-88 329.7 178 96.6
C08p05630 Brassica napus HOM05D003146 ORTHO05D001819 1.4e-88 329.7 178 97.8
BcaC07g37182 Brassica carinata HOM05D003146 ORTHO05D001819 2.3e-88 328.9 178 96.6
Sp1g35000 Schrenkiella parvula HOM05D003146 ORTHO05D001819 4.0e-80 301.6 178 88.2
AL1G54540 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 4.4e-79 298.1 175 88.6
AT1G48020 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 9.9e-79 297.0 175 88.0
Thhalv10011818m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 2.9e-78 295.4 178 86.0
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 2.1e-76 289.3 178 84.3
CARHR037660 Cardamine hirsuta HOM05D003146 ORTHO05D001819 3.5e-76 288.5 175 85.7
BcaC05g27598 Brassica carinata HOM05D003146 ORTHO05D001819 2.1e-73 279.3 176 81.8
C05p35840 Brassica napus HOM05D003146 ORTHO05D001819 2.1e-73 279.3 176 81.8
BolC5t32301H Brassica oleracea HOM05D003146 ORTHO05D001819 2.1e-73 279.3 176 81.8
AL1G54590 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 3.6e-73 278.5 163 88.3
A05p21240 Brassica napus HOM05D003146 ORTHO05D001819 3.6e-73 278.5 176 81.8
BraA05t21032Z Brassica rapa HOM05D003146 ORTHO05D001819 1.4e-72 276.6 176 81.2
BcaB02g11337 Brassica carinata HOM05D003146 ORTHO05D001819 1.8e-72 276.2 176 80.7
Aa31LG10G5790 Aethionema arabicum HOM05D003146 ORTHO05D001819 5.4e-53 211.5 179 59.2
THA.LOC104816708 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 8.4e-46 187.6 172 56.4
THA.LOC104825373 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 4.2e-45 185.3 174 55.7
THA.LOC104817105 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.1e-44 183.0 172 55.2
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.1e-44 183.0 178 53.4
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 4.9e-38 161.8 180 49.4
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 1.2e-28 130.6 175 41.1
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 1.3e-27 127.1 175 40.0
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 6.7e-27 124.8 175 40.0
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 6.7e-27 124.8 175 38.9
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 1.5e-26 123.6 175 39.4
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 3.3e-26 122.5 175 40.0
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 9.7e-26 120.9 173 42.2
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 1.8e-24 116.7 169 39.1
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 1.8e-24 116.7 169 39.1
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 1.8e-24 116.7 169 39.1
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 1.8e-24 116.7 169 39.1
A01p37050 Brassica napus HOM05D003146 ORTHO05D001819 2.4e-24 116.3 169 39.6
BraA01t03766Z Brassica rapa HOM05D003146 ORTHO05D001819 3.1e-24 115.9 169 39.1
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 4.1e-24 115.5 171 38.0
THA.LOC104802648 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.0e-23 113.2 168 38.7
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 7.7e-23 111.3 183 37.7
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 1.4e-19 100.5 176 36.9
Aa31LG10G5700 Aethionema arabicum HOM05D008385 ORTHO05D001819 3.0e-19 99.4 181 35.9
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 2.6e-18 96.3 146 37.7
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 3.7e-17 92.4 184 32.6
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 2.4e-16 89.7 158 33.5
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 2.4e-16 89.7 163 31.3
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.4e-15 85.9 183 32.2
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 4.5e-15 85.5 165 32.1
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-14 84.0 159 32.7
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-14 82.8 159 31.4
Aa31LG10G5710 Aethionema arabicum HOM05D008385 ORTHO05D010806 5.0e-14 82.0 153 35.3
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 5.0e-14 82.0 154 30.5
THA.LOC104801632 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 5.0e-14 82.0 183 33.9
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.5e-14 81.3 171 31.6
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.2e-13 79.3 159 31.4
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.5e-13 78.6 157 30.6
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.2e-13 78.2 171 31.6
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.4e-13 77.8 159 30.8
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 9.4e-13 77.8 176 30.1
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.6e-12 77.0 169 31.4
Glyma.15G207000 Glycine max HOM05D007995 ORTHO05D001819 1.6e-12 77.0 170 32.9
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 2.1e-12 76.6 150 32.0
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.1e-12 76.6 164 29.9
Glyma.15G207100 Glycine max HOM05D007995 ORTHO05D001819 2.1e-12 76.6 170 32.9
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 2.7e-12 76.3 169 30.2
QL06p013377 Quercus lobata HOM05D003146 ORTHO05D001819 2.7e-12 76.3 184 27.7
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 2.7e-12 76.3 164 31.7
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.6e-12 75.9 152 30.9
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.6e-12 75.9 152 30.9
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 3.6e-12 75.9 165 29.1
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 3.6e-12 75.9 169 33.1
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.1e-12 75.1 171 30.4
MELO3C027828.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.0e-12 74.7 161 30.4
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-11 74.3 141 32.6
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 1.0e-11 74.3 144 29.9
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 1.4e-11 73.9 167 30.5
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.4e-11 73.9 154 28.6
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-11 73.9 169 29.0
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-11 73.9 169 29.0
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 3.0e-11 72.8 155 31.0
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.9e-11 72.4 169 28.4
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.2e-11 72.0 161 29.8
BraA01t03769Z Brassica rapa HOM05D003146 ORTHO05D001819 1.1e-10 70.9 125 34.4
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.0e-10 70.1 166 29.5
Thhalv10012028m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 2.6e-10 69.7 160 30.0
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.3e-10 69.3 169 29.0
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 3.3e-10 69.3 169 33.1
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-10 68.9 169 28.4
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-10 68.9 163 27.6
MELO3C030077.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-10 68.9 169 29.0
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-10 68.9 169 27.8
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.4e-10 68.9 169 28.4
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.7e-10 68.6 163 29.4
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.7e-10 68.6 163 29.4
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.7e-10 68.6 163 29.4
TPR.G16193 Trifolium pratense HOM05D007995 ORTHO05D001819 5.7e-10 68.6 166 28.9
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.7e-10 67.8 169 26.6
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.7e-10 67.8 163 29.4
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.7e-10 67.8 163 29.4
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.7e-10 67.8 163 29.4
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.7e-10 67.8 163 29.4
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.7e-10 67.8 163 29.4
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-09 67.4 163 28.2
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 1.3e-09 67.4 151 28.5
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 1.7e-09 67.0 145 30.3
ClCG06G004590 Citrullus lanatus HOM05D003146 ORTHO05D001819 3.7e-09 65.9 159 26.4
THA.LOC104802647 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.7e-09 65.9 176 27.8
AT3G27999 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 4.8e-09 65.5 172 29.7
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 4.8e-09 65.5 141 31.9
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.3e-09 65.1 169 27.2
Actinidia18487 Actinidia chinensis HOM05D003146 ORTHO05D001819 8.2e-09 64.7 136 34.6
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 8.2e-09 64.7 151 27.2
Ca_06775_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.1e-08 64.3 166 24.7
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-08 63.5 169 26.6
C01p47000 Brassica napus HOM05D003146 ORTHO05D001819 2.4e-08 63.2 146 30.8
BolC1t04668H Brassica oleracea HOM05D003146 ORTHO05D001819 2.4e-08 63.2 146 30.8
Carub.0008s1110 Capsella rubella HOM05D008385 ORTHO05D010806 2.4e-08 63.2 180 28.3
BcaC09g48680 Brassica carinata HOM05D003146 ORTHO05D001819 3.1e-08 62.8 146 30.8
Phvul.007G271600 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 3.1e-08 62.8 168 28.6
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 4.1e-08 62.4 150 26.0
Hma1.2p1_1096F.1_g256660 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 4.1e-08 62.4 143 30.1
MSTRG.10815 Avicennia marina HOM05D011410 ORTHO05D013015 5.3e-08 62.0 164 29.3
MELO3C019686.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.3e-08 62.0 166 25.9
Thecc.10G106100 Theobroma cacao HOM05D015467 ORTHO05D001819 5.3e-08 62.0 181 25.4
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 7.0e-08 61.6 163 26.4
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 7.0e-08 61.6 151 28.5
VMungo0720G2167 Vigna mungo HOM05D007995 ORTHO05D001819 7.0e-08 61.6 179 27.4
A01p14680 Brassica napus HOM05D008385 ORTHO05D010806 9.1e-08 61.2 184 27.2
C01p18170 Brassica napus HOM05D008385 ORTHO05D010806 9.1e-08 61.2 184 27.2
C01p18190 Brassica napus HOM05D008385 ORTHO05D010806 9.1e-08 61.2 184 27.2
BolC1t01744H Brassica oleracea HOM05D008385 ORTHO05D010806 9.1e-08 61.2 184 27.2
Cfa014668 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.2e-07 60.8 163 23.9
Nn1g00664 Nelumbo nucifera HOM05D001445 ORTHO05D001261 1.2e-07 60.8 177 24.3
COL.COLO4_04545 Corchorus olitorius HOM05D015467 ORTHO05D001819 1.6e-07 60.5 181 26.0
Medtr6g023915 Medicago truncatula HOM05D007995 ORTHO05D001819 2.6e-07 59.7 165 27.3
Medtr6g023935 Medicago truncatula HOM05D007995 ORTHO05D001819 2.6e-07 59.7 165 26.7
Cfa006647 Carpinus fangiana HOM05D003556 ORTHO05D003404 3.5e-07 59.3 163 25.8
Dinv22851 Davidia involucrata HOM05D009438 ORTHO05D010870 3.5e-07 59.3 148 29.1
Cfa006646 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.5e-07 58.9 173 27.7
Dinv22850 Davidia involucrata HOM05D009438 ORTHO05D010870 4.5e-07 58.9 148 29.1
Manes.08G115700 Manihot esculenta HOM05D001445 ORTHO05D003404 4.5e-07 58.9 143 27.3
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 5.9e-07 58.5 174 27.6
A01p14670 Brassica napus HOM05D008385 ORTHO05D010806 7.7e-07 58.2 184 26.6
BraA01t01408Z Brassica rapa HOM05D008385 ORTHO05D010806 7.7e-07 58.2 184 26.6
CAN.G338.43 Capsicum annuum HOM05D003146 ORTHO05D001819 7.7e-07 58.2 131 25.2
MELO3C001272.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-06 57.8 126 28.6
Dinv22854 Davidia involucrata HOM05D009438 ORTHO05D010870 1.0e-06 57.8 185 27.0
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 1.3e-06 57.4 158 25.9
Rhsim07G0138100 Rhododendron simsii HOM05D009438 ORTHO05D010870 1.3e-06 57.4 147 25.2
Aqoxy3G02555 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 1.7e-06 57.0 123 30.1
CiPaw.07G023600 Carya illinoinensis HOM05D003556 ORTHO05D003404 2.2e-06 56.6 146 26.0
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-06 56.6 118 29.7
Nn1g02148 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.2e-06 56.6 177 23.2
Sed0025474 Sechium edule HOM05D003146 ORTHO05D001819 2.2e-06 56.6 166 22.9
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 2.9e-06 56.2 151 27.8
COL.COLO4_11312 Corchorus olitorius HOM05D015467 ORTHO05D001819 2.9e-06 56.2 171 25.7
COL.COLO4_24558 Corchorus olitorius HOM05D015467 ORTHO05D001819 2.9e-06 56.2 171 26.3
Glyma.17G044900 Glycine max HOM05D001445 ORTHO05D003404 3.8e-06 55.8 157 29.9
Phvul.007G271650 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 3.8e-06 55.8 128 28.1
CsaV3_UNG044260 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.0e-06 55.5 93 31.2
CsaV3_UNG083670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.0e-06 55.5 93 31.2
Hma1.2p1_3273F.1_g334810 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 5.0e-06 55.5 130 31.5
Hma1.2p1_3469F.1_g336200 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 5.0e-06 55.5 130 31.5
Lj2A1197T77 Lonicera japonica HOM05D003556 ORTHO05D003404 5.0e-06 55.5 147 29.3
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 5.0e-06 55.5 149 24.8
Actinidia14750 Actinidia chinensis HOM05D009438 ORTHO05D010870 6.5e-06 55.1 138 23.2
Rhsim06G0181100 Rhododendron simsii HOM05D009438 ORTHO05D001819 6.5e-06 55.1 115 30.4
PSO478G2336 Papaver somniferum HOM05D001445 ORTHO05D001261 8.5e-06 54.7 177 24.9


User provided reference genes

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