Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 5.5e-248 860.5 442 100.0
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.2e-247 859.4 442 99.8
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 1.4e-246 855.9 442 99.3
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 1.8e-246 855.5 442 99.3
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 6.8e-246 853.6 442 99.1
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 2.0e-245 852.0 442 99.1
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 1.7e-244 849.0 443 98.6
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 1.7e-244 849.0 443 98.6
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 2.2e-244 848.6 444 98.6
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 3.7e-244 847.8 443 98.4
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 2.4e-243 845.1 442 98.4
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 2.4e-243 845.1 442 98.4
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 5.0e-241 837.4 442 97.3
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 8.9e-238 826.6 442 95.7
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 5.8e-237 823.9 442 96.2
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 1.3e-236 822.8 442 95.7
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 9.2e-235 816.6 441 95.2
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.0e-233 813.1 441 94.8
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.6e-218 762.7 445 87.9
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.6e-215 752.7 448 85.5
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 4.0e-206 721.5 428 85.0
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 5.3e-206 721.1 429 84.1
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 7.6e-205 717.2 429 83.2
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 9.9e-205 716.8 432 83.1
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 9.9e-205 716.8 432 83.1
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.4e-204 713.8 424 84.4
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 8.4e-204 713.8 423 84.4
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.4e-203 711.1 424 84.2
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.3e-201 706.4 429 83.7
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 1.7e-201 706.1 429 84.1
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 6.6e-201 704.1 423 83.5
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-200 703.0 427 83.4
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-200 703.0 429 82.1
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.5e-200 702.2 424 84.0
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.6e-200 701.0 429 81.8
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 5.6e-200 701.0 429 81.8
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 4.8e-199 698.0 455 79.3
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.8e-198 696.0 429 82.8
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 9.9e-197 690.3 424 81.4
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 8.4e-196 687.2 425 80.9
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 1.1e-195 686.8 424 80.7
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 1.4e-195 686.4 433 80.6
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 5.4e-195 684.5 477 74.8
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.1e-195 684.1 428 80.1
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 9.3e-195 683.7 429 80.2
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.2e-194 683.3 425 81.2
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.2e-194 683.3 430 80.9
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.1e-194 682.6 425 80.2
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.1e-194 682.6 429 80.4
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 3.5e-194 681.8 433 79.0
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 4.6e-194 681.4 433 78.8
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.0e-194 681.0 435 79.8
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.0e-194 681.0 435 79.8
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.0e-194 681.0 429 80.2
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 3.9e-193 678.3 425 81.6
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 5.1e-193 677.9 438 79.0
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 8.7e-193 677.2 438 78.1
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 8.7e-193 677.2 431 80.3
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 1.1e-192 676.8 425 79.8
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-192 676.8 425 79.5
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.9e-192 676.0 425 79.5
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.9e-192 676.0 429 79.7
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 7.4e-192 674.1 429 79.5
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 7.4e-192 674.1 426 80.8
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 7.4e-192 674.1 422 79.9
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.3e-191 673.3 427 80.8
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.3e-191 673.3 435 80.0
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.8e-191 672.2 438 77.6
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.8e-191 672.2 438 78.5
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 4.8e-191 671.4 444 77.9
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 4.8e-191 671.4 432 79.2
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 6.2e-191 671.0 419 80.7
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 8.1e-191 670.6 422 79.9
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 8.1e-191 670.6 436 78.9
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.1e-190 670.2 428 78.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.1e-190 670.2 432 78.5
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.4e-190 669.8 378 87.0
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.8e-190 669.5 423 80.9
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.8e-190 669.5 431 78.9
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 3.1e-190 668.7 428 78.3
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 5.3e-190 667.9 434 79.0
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 5.3e-190 667.9 424 79.0
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 6.9e-190 667.5 427 79.2
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 6.9e-190 667.5 428 78.0
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 2.6e-189 665.6 424 78.8
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 5.8e-189 664.5 425 78.4
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 7.6e-189 664.1 440 77.0
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 9.9e-189 663.7 434 77.9
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 9.9e-189 663.7 430 78.8
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 9.9e-189 663.7 436 77.8
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 2.2e-188 662.5 439 75.6
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 3.8e-188 661.8 428 79.2
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 8.4e-188 660.6 428 78.5
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.1e-187 660.2 426 80.0
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.9e-187 659.4 429 78.6
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.9e-187 659.4 432 76.6
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 3.2e-187 658.7 429 78.1
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.2e-187 658.3 464 73.5
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 4.2e-187 658.3 429 77.9
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 7.1e-187 657.5 425 76.9
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 7.1e-187 657.5 428 77.6
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.5e-186 655.2 425 79.1
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.5e-186 655.2 455 74.3
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 4.6e-186 654.8 429 78.1
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 6.0e-186 654.4 425 78.8
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 3.0e-185 652.1 426 77.2
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 6.7e-185 651.0 445 75.7
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 3.3e-184 648.7 431 78.2
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.6e-184 647.1 425 77.4
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.6e-183 646.4 433 76.9
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.1e-183 646.0 432 76.6
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 2.8e-183 645.6 436 76.6
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 3.7e-183 645.2 427 78.2
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 3.7e-183 645.2 425 77.2
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.8e-182 642.9 428 76.9
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 6.0e-178 627.9 406 77.3
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.0e-177 627.1 428 75.2
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 4.3e-176 621.7 513 65.1
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.4e-176 620.9 426 75.1
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 7.4e-176 620.9 428 75.9
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 9.7e-176 620.5 547 61.8
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 6.3e-175 617.8 395 77.5
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.3e-172 610.1 431 73.1
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 5.0e-172 608.2 414 74.2
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 6.5e-172 607.8 435 73.3
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.2e-170 603.6 430 73.0
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.4e-169 600.1 408 72.1
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 2.3e-169 599.4 417 72.7
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 3.9e-169 598.6 388 74.2
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.3e-167 593.6 437 71.9
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.1e-166 590.5 342 83.6
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.1e-166 590.5 419 72.3
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.2e-165 587.0 384 74.2
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 2.2e-159 566.2 362 79.6
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.8e-158 563.1 337 83.7
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 9.1e-158 560.8 353 81.6
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.5e-157 560.1 362 77.9
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 8.5e-156 554.3 342 81.0
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.1e-150 537.3 345 74.5
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.7e-148 530.0 336 80.4
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 2.6e-144 516.2 436 64.9
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 4.4e-144 515.4 408 65.4
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 1.7e-143 513.5 322 77.3
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 4.1e-142 508.8 383 69.7
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.0e-141 506.5 432 63.7
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 2.7e-141 506.1 377 67.6
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 8.5e-140 501.1 345 74.2
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 6.8e-129 464.9 261 85.4
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 3.2e-118 429.5 262 82.4
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 1.6e-117 427.2 331 63.4
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 6.0e-117 425.2 283 75.3
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 3.4e-112 409.5 430 54.7
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 1.3e-100 370.9 230 81.7
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-98 364.4 239 76.6
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 2.3e-84 317.0 184 85.9
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 3.3e-83 313.2 231 71.4
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-82 310.8 186 83.9
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 2.4e-78 297.0 365 44.9
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 9.3e-78 295.0 355 49.3
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 5.7e-67 259.2 154 79.9
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 7.1e-62 242.3 220 63.6
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.6e-61 241.1 146 80.8
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 8.7e-60 235.3 186 61.8
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 8.7e-60 235.3 186 61.8
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.3e-58 231.5 244 56.6
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.1e-41 175.3 140 67.1
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.4e-41 174.9 99 87.9
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 4.5e-32 143.3 220 45.9
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.7e-29 133.3 294 35.7
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 3.0e-28 130.6 82 79.3
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 3.2e-22 110.5 82 69.5
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 4.2e-22 110.2 60 88.3
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.4e-19 100.5 90 58.9
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 3.4e-19 100.5 59 84.7
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 3.4e-19 100.5 59 84.7
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 2.3e-15 87.8 82 61.0
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 6.6e-15 86.3 82 62.2
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 2.5e-14 84.3 112 46.4
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 5.6e-14 83.2 82 61.0
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 5.6e-14 83.2 49 79.6
AL1G55650 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 1.2e-13 82.0 53 88.7
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 1.6e-13 81.6 45 82.2
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.4e-12 78.6 55 74.5
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 3.5e-08 63.9 43 72.1
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 1.7e-07 61.6 37 81.1
AT1G48860 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 1.5e-06 58.5 47 74.5


User provided reference genes

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