Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 2.4e-170 602.1 297 100.0
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 3.4e-169 598.2 297 99.7
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 3.3e-103 379.0 303 69.6
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 1.6e-89 333.6 567 40.4
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 1.6e-89 333.6 566 40.3
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 6.0e-89 331.6 578 39.8
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 6.7e-88 328.2 578 40.0
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 7.4e-87 324.7 567 40.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 9.6e-87 324.3 567 40.4
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 3.7e-86 322.4 567 40.0
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 4.8e-86 322.0 567 40.0
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 4.8e-86 322.0 567 40.0
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 1.4e-85 320.5 575 39.3
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 1.8e-85 320.1 577 39.2
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 2.5e-82 309.7 578 38.2
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 1.6e-81 307.0 576 38.4
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 2.4e-69 266.5 401 42.6
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 8.5e-67 258.1 576 34.4
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 2.8e-62 243.0 576 32.5
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 9.1e-53 211.5 522 31.0
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 1.5e-52 210.7 573 30.0
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.3e-51 207.6 577 28.9
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 1.7e-51 207.2 576 29.2
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 2.9e-51 206.5 579 29.0
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 5.0e-51 205.7 565 30.1
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 8.5e-51 204.9 575 28.5
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 1.9e-50 203.8 576 28.8
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 3.2e-50 203.0 208 56.2
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 5.5e-50 202.2 535 29.5
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 5.5e-50 202.2 570 29.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 9.4e-50 201.4 578 29.1
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 1.2e-49 201.1 563 29.0
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 1.6e-49 200.7 565 29.7
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 1.6e-49 200.7 578 28.5
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 2.1e-49 200.3 563 29.3
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 6.1e-49 198.7 217 47.0
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 6.1e-49 198.7 572 29.7
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 6.1e-49 198.7 578 28.7
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.0e-48 198.0 578 28.2
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 1.0e-48 198.0 578 28.2
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 2.3e-48 196.8 140 75.7
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 6.7e-48 195.3 576 27.8
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 1.5e-47 194.1 576 28.3
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 2.0e-47 193.7 570 28.9
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 7.4e-47 191.8 569 28.8
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 1.7e-46 190.7 531 28.8
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.2e-46 190.3 571 28.9
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 2.8e-46 189.9 571 28.9
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.3e-46 188.7 210 47.6
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 8.2e-46 188.3 571 27.7
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 8.2e-46 188.3 571 28.7
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.1e-45 188.0 572 28.8
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.1e-45 188.0 215 46.0
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.4e-45 187.6 571 28.9
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.8e-45 187.2 216 44.9
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.1e-45 186.4 565 28.1
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 5.3e-45 185.7 211 46.0
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 7.0e-45 185.3 563 26.8
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 7.0e-45 185.3 204 46.6
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 9.1e-45 184.9 573 27.6
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 9.1e-45 184.9 216 44.9
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 1.2e-44 184.5 213 46.0
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 2.0e-44 183.7 205 46.8
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 2.0e-44 183.7 572 28.1
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 2.0e-44 183.7 572 27.4
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 2.0e-44 183.7 565 28.8
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 2.6e-44 183.3 568 27.8
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 2.6e-44 183.3 573 27.2
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 3.5e-44 183.0 216 43.5
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 5.9e-44 182.2 212 43.4
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 7.7e-44 181.8 164 53.7
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 1.0e-43 181.4 216 43.5
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 1.0e-43 181.4 560 28.2
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 1.3e-43 181.0 213 45.5
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 1.7e-43 180.6 568 27.6
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.7e-43 180.6 209 44.5
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.7e-43 180.6 209 45.9
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 3.8e-43 179.5 209 44.0
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 5.0e-43 179.1 561 28.0
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 5.0e-43 179.1 213 45.1
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 6.5e-43 178.7 216 43.1
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 1.1e-42 177.9 572 27.1
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 1.5e-42 177.6 207 45.9
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 1.9e-42 177.2 207 45.9
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 2.5e-42 176.8 216 42.6
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 2.5e-42 176.8 213 45.1
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 5.5e-42 175.6 217 43.8
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 1.6e-41 174.1 216 40.7
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 6.1e-41 172.2 213 42.7
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 8.0e-41 171.8 165 50.9
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 1.8e-40 170.6 167 52.1
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 3.0e-40 169.9 216 40.3
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 4.0e-40 169.5 193 46.6
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 5.2e-40 169.1 216 39.8
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 5.2e-40 169.1 165 50.9
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 1.2e-39 167.9 217 41.5
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 1.5e-39 167.5 213 41.8
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 1.5e-39 167.5 525 27.2
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.5e-39 167.5 207 43.5
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 5.7e-39 165.6 172 47.1
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 5.7e-39 165.6 171 51.5
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 5.7e-39 165.6 155 52.3
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 7.5e-39 165.2 217 40.6
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 1.7e-38 164.1 171 50.3
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 7.0e-37 158.7 210 42.9
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 3.8e-35 152.9 207 43.0
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.2e-33 147.9 214 38.8
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.4e-29 134.4 203 38.9
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 4.5e-28 129.4 93 73.1
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.0e-27 128.3 186 39.2
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 2.9e-27 126.7 182 39.6
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.1e-26 124.8 89 60.7
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.4e-24 117.9 98 65.3
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 3.0e-24 116.7 101 65.3
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.2e-23 114.8 95 65.3
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.0e-23 114.0 155 41.3
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 3.2e-21 106.7 89 53.9
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.0e-19 101.7 133 41.4
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.3e-19 100.5 96 53.1
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.9e-19 100.1 95 56.8
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 6.8e-16 89.0 100 47.0
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 9.2e-13 78.6 143 37.1
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 1.6e-12 77.8 145 36.6
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 2.7e-12 77.0 173 31.8
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 8.0e-09 65.5 73 45.2
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 3.1e-08 63.5 80 38.8


User provided reference genes

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