Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 0.0e+00 1263.4 823 100.0
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 0.0e+00 1181.8 824 95.5
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 0.0e+00 1175.6 823 95.5
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 0.0e+00 1152.9 824 93.7
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 5.8e-291 1004.2 822 84.4
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.2e-288 996.5 865 81.8
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 6.9e-276 954.1 862 76.8
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 9.9e-267 923.7 843 80.2
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 1.1e-262 910.2 860 78.5
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.1e-260 903.7 851 75.2
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 2.8e-237 825.9 858 74.7
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.6e-184 650.6 866 63.0
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 5.8e-142 509.2 900 50.0
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 2.7e-115 420.6 888 43.1
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 4.1e-111 406.8 789 45.6
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 5.3e-111 406.4 779 44.0
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 2.5e-108 397.5 766 44.4
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 5.5e-108 396.4 771 46.2
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 3.6e-107 393.7 813 43.8
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 1.5e-105 388.3 705 45.2
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.3e-104 385.2 804 42.9
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 3.7e-104 383.6 951 37.6
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 6.3e-104 382.9 792 42.9
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 8.2e-104 382.5 811 42.8
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.1e-103 382.1 811 42.7
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 4.5e-102 376.7 813 45.6
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 1.0e-101 375.6 942 39.9
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 7.2e-100 369.4 453 53.6
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.6e-99 368.2 848 40.0
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 2.3e-98 364.4 807 38.7
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 2.3e-98 364.4 836 40.1
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 2.0e-97 361.3 778 43.3
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 3.4e-97 360.5 797 42.3
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 4.4e-97 360.1 813 42.6
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.8e-96 357.5 798 40.7
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.8e-96 357.5 789 39.9
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 3.7e-96 357.1 863 38.9
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 8.3e-96 355.9 434 50.7
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 8.3e-96 355.9 807 39.0
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 3.5e-94 350.5 467 52.2
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.3e-93 348.6 830 41.9
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.3e-93 348.6 430 50.7
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 3.8e-93 347.1 734 44.8
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 6.5e-93 346.3 788 37.6
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.5e-92 345.1 889 36.3
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 2.5e-92 344.4 432 49.3
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 8.0e-91 339.3 758 40.0
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.0e-90 339.0 809 43.3
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 4.0e-90 337.0 884 39.6
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 6.8e-90 336.3 872 39.4
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.5e-89 335.1 698 42.8
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 7.5e-89 332.8 453 48.1
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.7e-88 331.6 755 40.1
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 4.9e-88 330.1 706 40.4
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 6.3e-88 329.7 448 49.3
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.8e-87 328.2 695 42.2
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 7.0e-87 326.2 783 36.7
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 9.2e-87 325.9 681 39.6
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 1.2e-86 325.5 734 40.6
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 1.6e-86 325.1 755 42.3
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 2.7e-86 324.3 433 51.3
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 2.7e-86 324.3 732 40.6
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 5.9e-86 323.2 431 50.1
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.7e-85 321.6 442 50.5
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 2.3e-85 321.2 734 44.0
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 2.3e-85 321.2 439 50.6
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 2.3e-85 321.2 698 39.5
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 8.6e-85 319.3 683 40.8
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 1.9e-84 318.2 863 40.9
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 3.3e-84 317.4 454 48.9
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 1.2e-83 315.5 440 50.5
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 2.8e-83 314.3 443 47.2
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.8e-83 314.3 826 35.5
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.8e-83 314.3 751 36.8
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.8e-82 311.6 436 46.8
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 4.4e-81 307.0 413 52.1
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.3e-80 305.4 379 50.1
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 1.8e-79 301.6 736 37.5
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.5e-76 292.0 790 35.3
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.9e-76 291.6 648 38.1
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 1.2e-75 288.9 382 48.7
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 8.0e-75 286.2 815 34.2
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.2e-73 282.3 430 44.7
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 1.5e-73 282.0 463 43.0
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 2.9e-72 277.7 776 35.7
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 4.9e-72 276.9 440 43.2
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 2.4e-71 274.6 795 38.1
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 2.0e-70 271.6 724 34.5
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 1.6e-67 261.9 433 44.6
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.4e-66 258.8 666 39.9
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 8.9e-66 256.1 394 49.2
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 1.5e-65 255.4 427 45.2
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 3.4e-65 254.2 372 45.7
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 2.4e-63 248.1 371 46.6
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 3.2e-63 247.7 703 36.6
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.2e-51 209.1 312 44.6
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.2e-51 209.1 312 44.6
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.4e-47 195.7 334 44.3
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 2.0e-33 148.7 417 36.5
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.7e-32 145.6 557 39.1
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.0e-30 137.1 311 39.2
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 1.6e-27 129.0 360 35.0
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 3.2e-23 114.8 133 49.6
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 5.5e-23 114.0 161 48.4
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 3.5e-22 111.3 508 33.3
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 1.3e-19 102.8 192 40.6
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.7e-16 92.4 156 42.9
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 9.7e-12 76.6 437 27.9
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 3.1e-10 71.6 47 76.6
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.1e-10 71.6 112 42.9
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 7.7e-09 67.0 139 41.0
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 1.3e-08 66.2 116 37.9
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 6.1e-06 57.4 76 52.6


User provided reference genes

Program Settings