Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.1e-116 423.3 216 100.0
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 1.4e-114 416.4 216 98.1
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 2.9e-109 398.7 216 95.8
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 2.4e-103 379.0 216 92.1
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 6.1e-99 364.4 216 88.9
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.5e-97 359.8 215 87.9
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 2.8e-96 355.5 215 87.9
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.1e-95 353.6 215 87.9
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 2.0e-94 349.4 215 87.0
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 2.7e-94 349.0 217 87.6
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 2.9e-93 345.5 217 86.6
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 6.5e-93 344.4 217 86.2
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 6.5e-93 344.4 217 86.2
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 6.5e-93 344.4 217 86.2
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.1e-92 343.6 217 86.2
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.0e-90 337.0 216 84.3
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 6.1e-75 284.6 214 70.6
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 3.6e-67 258.8 153 85.6
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 2.6e-65 252.7 145 92.4
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 7.5e-57 224.6 219 57.5
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.7e-56 223.4 219 57.5
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 2.9e-56 222.6 222 58.1
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.9e-55 219.9 216 56.9
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 3.2e-55 219.2 216 56.9
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 9.2e-55 217.6 219 56.2
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.6e-54 216.9 218 54.1
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.6e-54 216.9 216 56.0
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 3.9e-53 212.2 217 53.5
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 6.6e-53 211.5 224 56.2
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.9e-52 209.9 228 51.8
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 6.2e-51 204.9 214 54.7
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 8.1e-51 204.5 220 54.1
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.1e-50 204.1 221 53.4
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.8e-50 203.4 224 52.2
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.8e-50 203.4 213 54.5
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 6.8e-50 201.4 223 53.8
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 8.9e-50 201.1 190 57.9
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.2e-49 200.7 227 52.9
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.5e-49 200.3 224 51.3
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.0e-49 199.9 226 52.2
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.0e-49 199.9 227 56.4
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 3.4e-49 199.1 232 50.9
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 3.4e-49 199.1 224 54.0
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 4.4e-49 198.7 220 50.9
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.6e-49 198.0 220 54.1
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.3e-48 197.2 225 52.9
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 2.2e-48 196.4 213 54.9
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 2.9e-48 196.1 273 46.2
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 4.9e-48 195.3 198 57.1
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 8.4e-48 194.5 172 61.0
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 1.1e-47 194.1 195 55.9
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.4e-47 193.7 163 62.6
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.9e-47 193.4 156 64.1
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 2.4e-47 193.0 195 57.4
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.2e-47 192.6 211 53.1
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 5.4e-47 191.8 218 51.8
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 5.4e-47 191.8 171 60.8
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 7.1e-47 191.4 167 61.1
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 7.1e-47 191.4 157 63.1
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 9.2e-47 191.0 168 59.5
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 9.2e-47 191.0 194 56.7
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 9.2e-47 191.0 156 64.7
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.2e-46 190.7 226 51.3
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.6e-46 190.3 176 58.0
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 2.1e-46 189.9 209 53.1
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 2.1e-46 189.9 216 53.2
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 4.6e-46 188.7 193 54.9
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 4.6e-46 188.7 197 52.8
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 6.0e-46 188.3 233 51.1
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 6.0e-46 188.3 179 58.7
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 7.8e-46 188.0 161 61.5
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.0e-45 187.6 154 63.0
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.0e-45 187.6 168 58.9
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.7e-45 186.8 163 60.7
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 2.3e-45 186.4 170 57.6
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 3.0e-45 186.0 166 57.2
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 3.9e-45 185.7 201 52.7
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 3.9e-45 185.7 166 56.6
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 5.1e-45 185.3 161 62.1
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 5.1e-45 185.3 166 56.6
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 6.6e-45 184.9 213 52.1
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 1.1e-44 184.1 165 55.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.5e-44 183.7 158 60.8
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.9e-44 183.3 185 55.7
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.9e-44 183.3 158 60.8
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 2.5e-44 183.0 153 63.4
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.5e-44 183.0 215 50.7
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 3.3e-44 182.6 217 50.2
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.3e-44 182.6 220 51.8
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.3e-44 182.6 222 52.7
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 4.3e-44 182.2 224 50.0
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 5.6e-44 181.8 214 50.5
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 9.6e-44 181.0 180 54.4
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.2e-43 180.6 222 52.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 4.7e-43 178.7 174 56.3
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 4.7e-43 178.7 197 53.3
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.4e-42 177.2 160 59.4
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.8e-42 176.8 156 59.0
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.9e-42 174.9 212 51.4
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 1.2e-41 174.1 153 60.1
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 2.6e-41 172.9 153 60.8
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 7.6e-41 171.4 177 55.4
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 3.8e-40 169.1 170 56.5
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.9e-39 166.8 156 57.7
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 1.9e-39 166.8 171 55.0
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 7.8e-38 161.4 152 59.2
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.1e-36 157.5 178 51.1
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.9e-36 156.8 187 46.5
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 7.3e-36 154.8 182 52.7
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 9.6e-36 154.5 221 44.3
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 2.1e-35 153.3 148 57.4
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.1e-34 151.0 188 47.9
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.2e-33 147.5 174 49.4
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 6.4e-32 141.7 150 52.0
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 8.4e-32 141.4 219 44.3
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 8.4e-32 141.4 148 50.7
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 8.7e-29 131.3 148 52.0
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.5e-28 130.6 115 64.3
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 4.3e-28 129.0 126 57.9
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.8e-27 126.3 125 55.2
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 8.1e-27 124.8 194 42.3
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 8.1e-27 124.8 207 41.5
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 8.1e-27 124.8 190 42.1
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-26 124.4 147 51.0
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.4e-23 113.2 85 63.5
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 5.5e-23 112.1 163 42.3
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 7.1e-23 111.7 112 55.4
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 2.7e-22 109.8 163 43.6
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 8.1e-19 98.2 97 56.7
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 6.9e-18 95.1 147 41.5
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.9e-16 89.7 53 86.8
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 2.5e-15 86.7 149 38.9
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 9.3e-15 84.7 121 48.8
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.9e-13 79.3 89 49.4
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.1e-12 77.8 91 53.8
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-12 77.0 71 52.1
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 3.3e-12 76.3 83 56.6
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 5.7e-12 75.5 254 31.1
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 2.1e-11 73.6 84 54.8
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 2.1e-11 73.6 147 43.5
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 2.8e-11 73.2 82 57.3
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 4.8e-11 72.4 88 48.9
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 4.8e-11 72.4 103 45.6
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.1e-10 71.2 194 34.5
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 1.7e-08 63.9 120 42.5
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 1.1e-07 61.2 169 31.4
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.9e-07 60.5 138 34.8
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.5e-07 60.1 42 66.7
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 2.5e-07 60.1 122 36.1


User provided reference genes

Program Settings