Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 6.8e-193 677.6 453 100.0
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 5.4e-190 667.9 453 97.1
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 5.8e-184 647.9 453 91.6
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-182 643.7 453 91.2
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 3.2e-182 642.1 453 90.1
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.0e-164 583.9 457 88.2
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 7.9e-133 478.0 496 66.5
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.8e-132 476.9 505 69.3
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 1.4e-129 467.2 499 64.5
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 7.0e-129 464.9 511 66.7
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 3.4e-128 462.6 486 68.9
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 6.3e-122 441.8 491 67.2
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.0e-119 434.5 487 70.6
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.7e-119 433.7 435 69.0
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 4.5e-112 409.1 454 61.5
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 4.2e-110 402.5 435 67.6
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 4.8e-106 389.0 454 62.3
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 5.9e-104 382.1 454 62.8
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.3e-103 380.9 454 62.8
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 5.4e-65 252.7 463 41.0
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 4.2e-57 226.5 503 40.0
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 4.2e-57 226.5 503 40.0
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.5e-54 218.0 503 40.4
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 4.3e-54 216.5 517 39.3
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.3e-53 214.9 493 35.7
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 2.6e-51 207.2 506 36.2
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 3.4e-51 206.8 506 36.2
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 1.4e-49 201.4 500 33.2
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.0e-47 195.3 502 35.3
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 3.0e-47 193.7 522 38.1
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.0e-47 193.7 502 36.1
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 8.7e-47 192.2 513 33.9
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.5e-46 191.4 523 32.9
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.5e-46 191.4 498 32.9
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 5.6e-46 189.5 505 35.2
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 7.4e-46 189.1 503 32.8
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 1.3e-45 188.3 510 37.3
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 2.8e-45 187.2 433 38.1
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 3.7e-45 186.8 359 38.4
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.1e-44 185.3 504 33.3
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.1e-44 185.3 499 39.7
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.4e-44 184.9 441 38.5
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 6.9e-44 182.6 502 33.5
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 9.0e-44 182.2 522 33.0
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.3e-42 178.3 502 36.9
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 2.2e-42 177.6 505 37.4
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.2e-42 177.6 497 33.0
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 4.9e-42 176.4 532 32.3
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 4.9e-42 176.4 517 33.5
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 6.4e-42 176.0 533 32.8
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 3.2e-41 173.7 502 31.5
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.2e-41 173.3 504 34.7
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 1.2e-40 171.8 369 36.0
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.6e-40 171.4 512 36.1
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 2.1e-40 171.0 515 35.3
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.1e-40 171.0 502 36.7
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 7.9e-40 169.1 508 39.4
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 1.8e-39 167.9 478 31.8
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.0e-39 167.2 477 35.8
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 3.9e-39 166.8 448 37.5
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.7e-39 166.0 535 32.9
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.9e-38 164.5 470 37.9
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.5e-38 164.1 460 32.0
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.3e-38 163.7 530 35.5
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 5.6e-38 162.9 513 31.0
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 1.3e-37 161.8 376 35.6
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.8e-37 159.8 393 34.1
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 6.2e-37 159.5 494 30.2
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 6.2e-37 159.5 502 29.9
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 8.2e-37 159.1 518 34.7
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 4.0e-36 156.8 488 30.5
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 5.3e-36 156.4 500 29.6
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.0e-35 154.5 517 33.3
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 2.0e-35 154.5 516 30.4
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 2.6e-35 154.1 483 32.9
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.5e-35 153.3 438 31.7
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 1.7e-34 151.4 491 29.9
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.2e-34 151.0 494 30.0
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.9e-34 150.6 392 33.2
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 3.8e-34 150.2 499 29.7
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.8e-34 150.2 500 29.8
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 3.8e-34 150.2 466 37.3
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 1.9e-33 147.9 502 29.7
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.5e-33 147.5 539 29.3
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 7.1e-33 146.0 434 34.1
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 7.1e-33 146.0 434 34.1
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 2.1e-32 144.4 419 35.8
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.9e-32 142.5 443 31.6
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.0e-31 142.1 332 41.3
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.3e-31 141.7 408 30.9
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.3e-31 141.7 386 31.9
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.8e-31 141.4 360 38.1
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 2.3e-31 141.0 456 31.1
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 3.0e-31 140.6 469 33.5
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 5.1e-31 139.8 448 30.4
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.1e-30 138.7 497 33.4
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 5.7e-30 136.3 364 37.6
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 8.2e-29 132.5 410 32.4
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 8.2e-29 132.5 456 36.4
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.1e-28 132.1 411 29.0
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 1.8e-28 131.3 412 34.5
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 2.4e-28 131.0 403 34.5
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 3.1e-28 130.6 483 31.1
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 5.3e-28 129.8 469 37.1
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 1.0e-26 125.6 270 34.1
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.0e-26 125.6 345 31.6
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.3e-26 125.2 457 29.5
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.3e-26 125.2 483 32.7
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 1.7e-26 124.8 342 33.6
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.6e-24 118.2 271 35.8
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.0e-23 114.0 393 30.0
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.1e-22 112.1 274 33.2
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.8e-21 107.5 182 41.2
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 3.7e-21 107.1 473 25.4
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 4.8e-21 106.7 407 27.5
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 4.8e-21 106.7 498 28.1
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.8e-20 104.8 310 39.7
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.4e-20 104.4 297 29.3
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 2.4e-20 104.4 338 30.2
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 4.1e-20 103.6 248 33.1
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.0e-19 101.3 228 37.7
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 3.4e-19 100.5 219 37.9
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 1.8e-15 88.2 393 26.5
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 5.1e-15 86.7 157 38.9
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.0e-14 84.7 269 30.5
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.7e-13 81.6 146 43.2
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 2.2e-13 81.3 123 39.0
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.2e-13 81.3 62 59.7
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 6.3e-13 79.7 365 25.2
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 2.4e-12 77.8 58 62.1
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.1e-12 77.4 58 60.3
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 3.5e-11 73.9 274 27.4
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 5.9e-11 73.2 329 25.8
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 5.5e-09 66.6 183 29.0
AL7G40510 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 8.0e-08 62.8 89 50.6
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 3.0e-07 60.8 50 56.0
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 5.7e-06 56.6 216 27.3


User provided reference genes

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