Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 4.4e-43 177.6 89 100.0
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 4.4e-27 124.4 74 82.4
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 4.4e-27 124.4 74 82.4
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 4.4e-27 124.4 74 82.4
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 5.7e-27 124.0 74 83.8
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-26 122.5 74 81.1
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.7e-26 122.5 74 81.1
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.1e-25 119.8 74 81.1
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.1e-25 119.8 74 79.7
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.1e-25 119.8 74 78.4
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 3.1e-25 118.2 74 81.1
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 4.1e-25 117.9 72 86.1
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.2e-24 116.3 73 78.1
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 4.5e-24 114.4 74 78.4
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.9e-22 109.0 60 91.7
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.9e-22 109.0 60 91.7
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.9e-22 109.0 60 91.7
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.1e-17 93.2 74 64.9
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 2.4e-17 92.0 73 63.0
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.7e-15 85.9 82 57.3
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.8e-15 84.7 82 57.3
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 8.6e-15 83.6 74 58.1
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.5e-14 82.0 82 56.1
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 4.2e-14 81.3 82 53.7
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 5.5e-14 80.9 74 55.4
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.2e-13 79.7 82 53.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.2e-13 79.7 82 51.2
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.6e-13 79.3 73 57.5
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.6e-13 79.3 73 54.8
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 2.1e-13 79.0 82 46.3
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.8e-13 78.6 82 52.4
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 2.8e-13 78.6 82 51.2
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.8e-13 78.6 73 56.2
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 4.7e-13 77.8 82 52.4
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 4.7e-13 77.8 73 56.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.7e-13 77.8 73 53.4
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 6.1e-13 77.4 74 54.1
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 6.1e-13 77.4 74 54.1
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 8.0e-13 77.0 84 44.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 8.0e-13 77.0 84 42.9
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.0e-12 76.6 82 51.2
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-12 76.3 82 51.2
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-12 76.3 82 51.2
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.4e-12 76.3 84 42.9
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.4e-12 76.3 82 51.2
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.8e-12 75.9 82 50.0
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 2.3e-12 75.5 74 54.1
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 3.0e-12 75.1 82 51.2
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-12 75.1 82 51.2
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-12 75.1 82 51.2
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-12 75.1 82 51.2
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-12 75.1 82 51.2
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.0e-12 75.1 82 52.4
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 4.0e-12 74.7 82 48.8
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 5.2e-12 74.3 82 50.0
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 6.8e-12 73.9 74 52.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 6.8e-12 73.9 82 52.4
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 6.8e-12 73.9 82 51.2
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 8.9e-12 73.6 82 51.2
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.2e-11 73.2 82 51.2
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.5e-11 72.8 74 51.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.5e-11 72.8 74 51.4
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.5e-11 72.8 81 51.9
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.0e-11 72.4 82 51.2
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 2.0e-11 72.4 74 51.4
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.0e-11 72.4 74 51.4
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 2.6e-11 72.0 82 46.3
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.6e-11 72.0 74 51.4
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.4e-11 71.6 76 50.0
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.4e-11 71.6 73 53.4
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.4e-11 71.2 74 51.4
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.4e-11 71.2 74 51.4
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 4.4e-11 71.2 82 47.6
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 5.7e-11 70.9 82 47.6
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.7e-11 70.9 73 49.3
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 5.7e-11 70.9 74 50.0
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 5.7e-11 70.9 76 46.1
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 9.8e-11 70.1 74 50.0
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.2e-10 68.9 73 47.9
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.2e-10 68.9 74 45.9
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.8e-10 68.6 74 47.3
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.3e-10 67.4 74 47.3
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 6.3e-10 67.4 76 46.1
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 8.3e-10 67.0 73 46.6
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.4e-09 66.2 73 47.9
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.8e-09 65.9 75 46.7
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.8e-09 65.9 75 46.7
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.4e-09 65.5 73 46.6
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.1e-09 64.7 75 46.7
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 9.2e-09 63.5 82 46.3
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 9.2e-09 63.5 103 38.8
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 9.2e-09 63.5 73 45.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.2e-08 63.2 74 43.2
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.6e-08 62.8 73 41.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.6e-08 62.8 73 42.5
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.6e-08 62.8 74 47.3
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.0e-08 62.4 75 45.3
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.7e-08 62.0 73 42.5
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 3.5e-08 61.6 74 43.2
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 3.5e-08 61.6 61 52.5
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 7.8e-08 60.5 74 41.9
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.0e-07 60.1 76 39.5
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.0e-07 60.1 74 41.9
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.3e-07 59.7 75 41.3
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.3e-07 59.7 74 44.6
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.7e-07 59.3 74 40.5
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 2.3e-07 58.9 73 42.5
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 2.3e-07 58.9 76 42.1
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.9e-07 58.2 74 39.2
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 6.6e-07 57.4 76 44.7
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.1e-06 56.6 74 40.5
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.3e-06 55.1 74 39.2
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.3e-06 55.1 78 41.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 3.3e-06 55.1 74 39.2
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 3.3e-06 55.1 74 39.2


User provided reference genes

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