Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 3505.3 1825 100.0
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 3436.4 1826 98.1
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 3387.4 1839 96.7
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 3338.9 1839 95.5
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 3231.0 1828 92.3
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 3228.7 1840 91.6
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 3151.3 1825 89.9
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 3138.2 1821 89.7
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 3138.2 1825 89.3
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 3108.2 1828 88.5
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 3063.1 1827 87.0
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2831.2 1832 80.1
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2411.3 1825 67.4
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2392.8 1822 67.6
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2387.1 1818 67.3
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2366.3 1827 67.0
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2365.5 1821 67.3
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2360.5 1822 66.7
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2348.9 1819 66.7
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2342.4 1827 66.3
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2340.8 1822 65.5
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2330.1 1819 65.9
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2313.9 1822 66.5
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2312.7 1844 65.5
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2310.4 1820 65.9
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2306.6 1827 64.8
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2302.3 1844 65.2
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2299.2 1828 64.7
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2296.5 1873 63.9
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2293.8 1824 65.3
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2271.9 1815 64.6
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2260.0 1818 63.9
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2254.6 1816 64.6
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2247.6 1827 63.3
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2245.7 1819 63.9
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2244.9 1811 63.7
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2240.3 1822 63.4
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2236.1 1809 63.2
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2232.6 1816 64.0
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2229.9 1825 62.8
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2228.8 1816 64.3
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2222.6 1817 64.3
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2219.9 1823 64.1
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2216.4 1815 63.9
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2213.3 1814 63.8
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2210.6 1817 63.5
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2210.3 1811 64.2
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2207.6 1819 63.3
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2203.3 1823 62.5
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2201.8 1815 63.6
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2199.5 1817 63.5
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2193.7 1816 62.3
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2186.4 1858 63.1
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2185.6 1818 61.7
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2185.2 1831 63.0
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2184.8 1816 61.9
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2175.6 1829 61.8
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2175.2 1810 61.1
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2174.8 1813 63.4
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2172.5 1830 61.7
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2168.3 1815 62.1
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2167.5 1823 61.2
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2163.3 1819 61.5
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2160.6 1843 61.9
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2155.9 1824 62.1
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2150.2 1796 63.1
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2149.4 1829 61.1
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2145.2 1820 61.0
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2144.4 1814 62.0
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2138.6 2371 51.3
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2137.1 1985 57.7
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2112.0 1849 59.4
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2091.2 1824 60.5
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2071.2 1898 58.6
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2033.5 1823 58.7
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2016.1 1827 57.8
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1941.0 1360 79.0
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1938.7 1479 67.7
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1880.1 1506 64.2
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1863.6 1400 67.6
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1765.7 1358 66.1
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1726.5 1399 63.5
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1725.7 1310 67.6
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1724.5 1317 67.0
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1652.9 1877 47.6
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1561.6 1353 61.2
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1553.9 1867 46.2
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1540.4 1343 61.2
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1530.0 1884 45.8
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1521.1 1841 47.3
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1466.1 1240 63.7
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1429.5 1656 47.0
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1369.4 1147 61.9
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1352.4 1096 64.0
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1262.3 1130 58.2
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1131.7 904 62.2
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1098.6 1058 55.4
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 4.3e-286 989.2 1577 37.3
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.7e-271 940.6 888 55.6
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 9.0e-252 875.2 1748 34.2
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 4.0e-244 849.7 1804 33.6
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 3.5e-232 810.1 639 65.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 4.5e-219 766.5 791 50.6
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 9.8e-190 669.1 610 59.2
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 2.4e-188 664.5 500 70.0
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 9.2e-172 609.4 683 50.7
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 2.7e-171 607.8 452 68.4
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 4.3e-169 600.5 459 68.0
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 4.4e-166 590.5 2023 27.1
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.1e-152 545.0 512 56.8
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.7e-146 525.4 450 62.0
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.6e-144 518.8 347 74.4
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 2.1e-144 518.5 462 61.9
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 5.3e-127 460.7 295 75.3
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.3e-109 402.9 835 34.0
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 6.9e-103 380.6 370 56.5
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 2.5e-92 345.5 292 60.6
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 4.7e-91 341.3 295 59.3
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 1.0e-90 340.1 962 26.4
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 8.8e-90 337.0 293 59.4
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 3.2e-76 292.0 356 53.1
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.2e-75 290.0 161 85.7
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 8.0e-67 260.8 156 91.0
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.0e-66 260.4 199 67.3
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 8.9e-66 257.3 274 48.2
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 5.9e-62 244.6 338 42.9
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.9e-60 239.6 346 38.7
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.5e-57 229.9 206 56.8
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 5.4e-55 221.5 159 66.7
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 1.3e-45 190.3 192 52.1
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.1e-43 183.0 157 65.0
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 5.2e-42 178.3 149 57.0
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 3.0e-37 162.5 110 73.6
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 3.9e-37 162.2 295 38.6
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 6.2e-35 154.8 167 53.3
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 5.2e-34 151.8 207 44.0
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.3e-29 137.1 261 36.8
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 2.5e-28 132.9 121 61.2
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 4.3e-28 132.1 185 45.9
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.3e-27 130.6 185 45.4
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 9.9e-25 120.9 99 59.6
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 3.8e-24 119.0 172 39.5
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 8.4e-24 117.9 77 71.4
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 4.2e-23 115.5 75 73.3
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.2e-22 114.0 142 43.7
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.1e-18 99.4 147 40.8
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.9e-17 94.4 84 50.0
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 3.8e-16 92.4 170 35.9
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 8.4e-16 91.3 92 54.3
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.9e-15 90.1 106 49.1
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.2e-14 87.4 102 53.9
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 6.0e-14 85.1 234 26.9
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 6.7e-13 81.6 177 32.8
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.3e-11 77.4 117 44.4
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 8.2e-11 74.7 55 61.8
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 9.0e-10 71.2 60 55.0
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 2.6e-09 69.7 57 71.9
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.9e-07 63.5 118 33.1
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 9.3e-07 61.2 66 50.0
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 2.1e-06 60.1 78 46.2
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 3.5e-06 59.3 50 48.0


User provided reference genes

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