Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.3e-136 488.4 257 100.0
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.4e-134 483.0 257 99.2
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.6e-125 453.0 256 93.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-121 439.5 254 93.3
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.8e-121 439.5 254 93.3
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 3.4e-112 408.7 259 86.5
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 7.5e-112 407.5 252 89.3
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 9.8e-112 407.1 254 88.2
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.4e-110 402.5 257 86.4
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 5.4e-110 401.4 260 85.8
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.7e-109 399.1 249 87.1
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.7e-109 399.1 260 86.9
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.7e-109 399.1 260 86.9
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 2.9e-108 395.6 252 87.3
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.8e-108 395.2 257 85.6
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.4e-105 386.7 260 85.0
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.0e-92 344.0 245 78.4
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 2.2e-79 299.7 215 74.9
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.1e-78 297.4 244 71.7
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.7e-76 290.0 252 66.3
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.7e-76 290.0 253 64.4
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 3.0e-76 289.3 254 65.7
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 6.6e-76 288.1 245 66.1
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 4.3e-75 285.4 251 65.3
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 7.3e-75 284.6 267 65.5
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 9.5e-75 284.3 242 66.1
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.2e-74 283.9 241 66.0
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 2.8e-74 282.7 244 67.6
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 8.1e-74 281.2 267 64.4
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 8.1e-74 281.2 254 63.8
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.1e-73 280.8 248 62.5
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.1e-73 280.8 261 64.8
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.1e-73 280.8 252 62.7
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.4e-73 280.4 243 64.2
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.4e-73 280.4 249 65.1
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.8e-73 280.0 247 65.6
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 3.1e-73 279.3 247 64.4
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 3.1e-73 279.3 255 64.3
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 6.8e-73 278.1 246 65.4
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 6.8e-73 278.1 248 66.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 8.9e-73 277.7 247 65.2
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 8.9e-73 277.7 246 62.2
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.2e-72 277.3 244 63.9
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.5e-72 276.9 224 67.4
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 2.6e-72 276.2 244 63.9
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 4.4e-72 275.4 249 63.5
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 5.8e-72 275.0 236 65.3
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 5.8e-72 275.0 244 65.2
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 9.9e-72 274.2 249 61.0
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 2.2e-71 273.1 247 62.8
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 3.8e-71 272.3 267 62.5
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 3.8e-71 272.3 253 61.3
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 3.8e-71 272.3 246 65.4
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 4.9e-71 271.9 249 63.1
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 8.4e-71 271.2 242 65.7
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 8.4e-71 271.2 247 61.9
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.1e-70 270.8 235 66.4
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.4e-70 270.4 228 67.1
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.2e-69 267.3 250 60.8
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 1.6e-69 266.9 249 59.0
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.6e-69 266.9 256 60.2
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 3.5e-69 265.8 277 59.6
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 3.5e-69 265.8 277 59.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 3.5e-69 265.8 249 61.0
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.5e-69 265.8 242 62.8
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 4.6e-69 265.4 242 62.8
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.6e-69 265.4 242 62.8
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.6e-69 265.4 242 62.8
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.6e-69 265.4 242 62.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 6.0e-69 265.0 242 64.0
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 3.0e-68 262.7 205 68.8
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 6.6e-68 261.5 215 67.4
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.5e-67 260.4 242 63.2
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.9e-67 260.0 204 68.1
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 3.3e-67 259.2 243 60.9
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 4.3e-67 258.8 204 67.6
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 4.3e-67 258.8 214 63.6
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 7.3e-67 258.1 297 56.9
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 7.3e-67 258.1 245 64.1
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 9.6e-67 257.7 243 57.6
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 4.7e-66 255.4 249 61.4
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 8.1e-66 254.6 261 55.6
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.1e-65 254.2 240 62.9
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.4e-65 253.8 236 62.7
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 6.9e-65 251.5 236 62.3
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 8.9e-65 251.1 209 68.9
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.2e-64 250.8 261 59.8
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 2.0e-64 250.0 202 69.3
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.6e-64 249.6 199 66.8
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 2.6e-64 249.6 208 65.9
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.4e-64 249.2 165 78.8
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 5.8e-64 248.4 171 77.8
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.7e-63 246.9 258 57.0
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.7e-63 246.9 188 70.2
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.2e-63 246.5 244 61.9
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 3.8e-63 245.7 242 57.9
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 4.9e-63 245.4 191 69.1
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.4e-63 244.6 211 65.4
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.1e-62 244.2 251 55.8
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.4e-62 243.8 197 66.0
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 2.4e-62 243.0 197 65.5
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.2e-62 242.7 244 61.1
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 9.3e-62 241.1 211 64.5
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.6e-61 240.4 244 56.1
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 2.1e-61 240.0 200 68.0
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.1e-61 240.0 219 62.6
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 2.7e-61 239.6 197 65.5
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 5.1e-60 235.3 195 68.7
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.5e-59 233.8 162 77.2
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 5.6e-59 231.9 216 63.0
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 9.6e-59 231.1 253 55.3
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.1e-58 229.9 247 56.3
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 6.2e-58 228.4 241 54.8
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 3.1e-57 226.1 197 63.5
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 4.0e-57 225.7 244 54.5
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 5.3e-57 225.3 215 60.0
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 5.3e-57 225.3 234 53.4
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.2e-56 224.2 258 53.1
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.6e-56 223.0 215 59.1
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 2.2e-55 219.9 138 84.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.9e-55 218.8 233 52.8
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.9e-55 218.8 232 53.0
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.1e-54 217.6 223 54.3
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 7.1e-54 214.9 242 52.9
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.1e-53 213.4 241 51.9
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.3e-52 210.7 255 48.6
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 2.3e-52 209.9 235 53.2
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.1e-51 207.6 234 50.9
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.6e-50 203.8 188 56.9
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 5.3e-49 198.7 204 56.4
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.6e-48 196.4 239 50.2
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.3e-44 183.3 205 55.1
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 6.7e-44 181.8 242 46.7
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 3.3e-43 179.5 222 49.1
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.7e-42 176.0 115 82.6
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.8e-41 173.7 210 53.8
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.6e-40 169.9 174 58.6
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.3e-39 167.5 188 53.2
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 1.9e-38 163.7 233 45.1
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.1e-37 160.2 202 49.0
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.3e-36 157.5 162 52.5
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 4.8e-34 149.1 186 47.3
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 2.4e-33 146.7 99 77.8
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 5.9e-32 142.1 200 48.5
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-30 137.9 213 42.3
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.4e-30 137.5 96 78.1
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.9e-30 137.1 200 42.5
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.1e-29 133.7 213 43.7
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.8e-25 120.6 109 61.5
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 6.9e-25 118.6 117 64.1
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 5.0e-23 112.5 93 60.2
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 5.5e-22 109.0 119 51.3
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.2e-13 81.3 132 41.7
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.1e-13 79.0 158 43.7
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 2.6e-11 73.6 91 51.6
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 2.0e-08 63.9 63 60.3
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 2.0e-08 63.9 95 50.5
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 2.0e-08 63.9 102 45.1


User provided reference genes

Program Settings