Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p45350 Brassica napus HOM05D007254 ORTHO05D009002 5.0e-75 284.3 135 100.0
BcaC03g15986 Brassica carinata HOM05D007254 ORTHO05D009002 2.3e-27 125.9 155 47.1
C02p37430 Brassica napus HOM05D007254 ORTHO05D009002 2.3e-27 125.9 155 47.1
BolC2t09755H Brassica oleracea HOM05D007254 ORTHO05D009002 2.3e-27 125.9 155 47.1
A02p23670 Brassica napus HOM05D007254 ORTHO05D009002 1.5e-26 123.2 156 48.1
BraA02t07360Z Brassica rapa HOM05D007254 ORTHO05D009002 1.9e-26 122.9 156 47.4
Sp5g35520 Schrenkiella parvula HOM05D007254 ORTHO05D009002 3.3e-26 122.1 155 47.7
AT1G80290 Arabidopsis thaliana HOM05D007254 ORTHO05D009002 4.3e-26 121.7 151 47.0
BcaB05g25281 Brassica carinata HOM05D007254 ORTHO05D009002 1.1e-24 117.1 153 45.1
Thhalv10000547m.g Eutrema salsugineum HOM05D007254 ORTHO05D009002 1.8e-24 116.3 153 45.1
CARHR074200 Cardamine hirsuta HOM05D007254 ORTHO05D009002 5.3e-24 114.8 154 46.1
AL2G41210 Arabidopsis lyrata HOM05D007254 ORTHO05D009002 6.9e-24 114.4 154 44.8
Aa31LG4G570 Aethionema arabicum HOM05D007254 ORTHO05D009002 1.7e-22 109.8 166 41.0
BcaB02g08695 Brassica carinata HOM05D007254 ORTHO05D009002 2.2e-22 109.4 89 62.9
BraA07t32039Z Brassica rapa HOM05D007254 ORTHO05D009002 3.2e-21 105.5 53 96.2
THA.LOC104812613 Tarenaya hassleriana HOM05D007254 ORTHO05D009002 9.3e-21 104.0 89 59.6
Carub.0003s3026 Capsella rubella HOM05D007254 ORTHO05D009002 3.5e-20 102.1 84 60.7
MD08G1123400 Malus domestica HOM05D007254 ORTHO05D009002 6.0e-20 101.3 134 41.0
Ca_12841_v3 Cicer arietinum L. HOM05D007254 ORTHO05D009002 8.7e-19 97.4 169 36.7
Cpa.g.sc488.3 Carica papaya HOM05D007254 ORTHO05D009002 3.3e-18 95.5 93 50.5
Medtr1g009180 Medicago truncatula HOM05D007254 ORTHO05D009002 5.6e-18 94.7 146 37.7
Ca_12843_v3 Cicer arietinum L. HOM05D007254 ORTHO05D009002 9.6e-18 94.0 169 35.5
Manes.11G154500 Manihot esculenta HOM05D007254 ORTHO05D009002 9.6e-18 94.0 108 48.1
Dinv13245 Davidia involucrata HOM05D007254 ORTHO05D009002 1.3e-17 93.6 156 35.9
Prupe.1G455400 Prunus persica HOM05D007254 ORTHO05D009002 8.1e-17 90.9 165 33.3
Duzib150G0445 Durio zibethinus HOM05D007254 ORTHO05D009002 1.4e-16 90.1 86 53.5
FAN15G2622 Fragaria x ananassa HOM05D007254 ORTHO05D009002 1.8e-16 89.7 94 46.8
TPR.G27365 Trifolium pratense HOM05D007254 ORTHO05D009002 1.8e-16 89.7 145 37.2
ECA246G3277 Erigeron canadensis HOM05D007254 ORTHO05D009002 2.4e-16 89.4 160 33.8
Lsat_1_v5_gn_3_26521 Lactuca sativa HOM05D007254 ORTHO05D009002 2.4e-16 89.4 162 34.6
Ciclev10010680m.g Citrus clementina HOM05D007254 ORTHO05D009002 3.1e-16 89.0 89 48.3
Cc10_g10060 Coffea canephora HOM05D007254 ORTHO05D009002 3.1e-16 89.0 154 35.7
TAR636G2989 Trochodendron aralioides HOM05D007254 ORTHO05D009002 4.0e-16 88.6 163 33.7
FAN20G0412 Fragaria x ananassa HOM05D007254 ORTHO05D009002 5.3e-16 88.2 94 45.7
Gohir.D12G121900 Gossypium hirsutum HOM05D007254 ORTHO05D009002 6.9e-16 87.8 86 51.2
Gorai.008G132700 Gossypium raimondii HOM05D007254 ORTHO05D009002 6.9e-16 87.8 86 51.2
Sabra06G0216000 Salix brachista HOM05D007254 ORTHO05D009002 6.9e-16 87.8 161 34.8
Gohir.A12G118100 Gossypium hirsutum HOM05D007254 ORTHO05D009002 9.0e-16 87.4 86 48.8
vmacro21974 Vaccinium macrocarpon HOM05D007254 ORTHO05D009002 9.0e-16 87.4 160 34.4
Haze_21799 Corylus avellana HOM05D007254 ORTHO05D009002 1.2e-15 87.0 88 47.7
Cfa013312 Carpinus fangiana HOM05D007254 ORTHO05D009002 1.5e-15 86.7 88 47.7
FvH4_2g36410 Fragaria vesca HOM05D007254 ORTHO05D009002 1.5e-15 86.7 94 45.7
FAN27G2933 Fragaria x ananassa HOM05D007254 ORTHO05D009002 1.5e-15 86.7 94 45.7
CANSAT25G1896 Cannabis sativa HOM05D007254 ORTHO05D009002 2.0e-15 86.3 157 35.0
Potri.006G278400 Populus trichocarpa HOM05D007254 ORTHO05D009002 2.6e-15 85.9 100 44.0
CiPaw.08G021500 Carya illinoinensis HOM05D007254 ORTHO05D009002 5.8e-15 84.7 156 33.3
Eucgr.C04240 Eucalyptus grandis HOM05D007254 ORTHO05D009002 5.8e-15 84.7 107 42.1
Psat6g034520 Pisum sativum HOM05D007254 ORTHO05D009002 5.8e-15 84.7 121 39.7
CDE06G0391 Ceratophyllum demersum HOM05D007254 ORTHO05D009002 7.6e-15 84.3 97 45.4
MD15G1102400 Malus domestica HOM05D007254 ORTHO05D009002 7.6e-15 84.3 94 43.6
HanXRQChr12g0384041 Helianthus annuus HOM05D007254 ORTHO05D009002 9.9e-15 84.0 156 34.6
PGR044G2739 Punica granatum HOM05D007254 ORTHO05D009002 9.9e-15 84.0 149 33.6
Lj3g0004031 Lotus japonicus HOM05D007254 ORTHO05D009002 1.3e-14 83.6 152 34.9
Atru.chr7.2684 Acer truncatum HOM05D007254 ORTHO05D009002 2.2e-14 82.8 83 47.0
Thecc.09G003000 Theobroma cacao HOM05D007254 ORTHO05D009002 2.2e-14 82.8 93 48.4
MBI16_g18202_MAGBIO Magnolia biondii HOM05D007254 ORTHO05D009002 6.4e-14 81.3 153 34.6
TWI34G0126 Tripterygium wilfordii HOM05D007254 ORTHO05D009002 6.4e-14 81.3 88 43.2
ClCG05G026310 Citrullus lanatus HOM05D007254 ORTHO05D009002 8.4e-14 80.9 107 43.0
MELO3C003600.2 Cucumis melo HOM05D007254 ORTHO05D009002 8.4e-14 80.9 107 43.0
VMungo0251G2754 Vigna mungo HOM05D007254 ORTHO05D009002 8.4e-14 80.9 98 44.9
CsaV3_3G047290 Cucumis sativus L. HOM05D007254 ORTHO05D009002 1.1e-13 80.5 107 42.1
Sc09g0007400 Simmondsia chinensis HOM05D007254 ORTHO05D009002 1.1e-13 80.5 103 41.7
arahy.Tifrunner.gnm1.ann1.2B8833 Arachis hypogaea HOM05D007254 ORTHO05D009002 1.4e-13 80.1 92 41.3
arahy.Tifrunner.gnm1.ann1.CY5H5G Arachis hypogaea HOM05D007254 ORTHO05D009002 1.4e-13 80.1 92 41.3
RcHm_v2.0_Chr6g0305491 Rosa chinensis HOM05D007254 ORTHO05D009002 1.9e-13 79.7 87 43.7
CSS0032984 Camellia sinensis var. sinensis HOM05D007254 ORTHO05D009002 7.1e-13 77.8 98 38.8
Lalb_Chr22g0361141 Lupinus albus HOM05D007254 ORTHO05D009002 9.3e-13 77.4 171 30.4
QL12p025906 Quercus lobata HOM05D007254 ORTHO05D009002 9.3e-13 77.4 88 42.0
PSO063G7066 Papaver somniferum HOM05D007254 ORTHO05D009002 2.1e-12 76.3 150 33.3
Solyc08g006080.1 Solanum lycopersicum HOM05D007254 ORTHO05D009002 2.1e-12 76.3 97 42.3
Sopen08g002050 Solanum pennellii HOM05D007254 ORTHO05D009002 2.1e-12 76.3 97 42.3
Glyma.15G027100 Glycine max HOM05D007254 ORTHO05D009002 2.7e-12 75.9 84 44.0
Phvul.002G252600 Phaseolus vulgaris HOM05D007254 ORTHO05D009002 7.9e-12 74.3 98 39.8
Sed0008272 Sechium edule HOM05D007254 ORTHO05D009002 1.8e-11 73.2 87 39.1
Nitab4.5_0004859g0100 Nicotiana tabacum HOM05D007254 ORTHO05D009002 2.3e-11 72.8 92 44.6
PSO170G3828 Papaver somniferum HOM05D007254 ORTHO05D009002 2.3e-11 72.8 150 33.3
PGSC0003DMG400014857 Solanum tuberosum HOM05D007254 ORTHO05D009002 2.3e-11 72.8 97 41.2
AUR62020641 Chenopodium quinoa HOM05D007254 ORTHO05D009002 3.9e-11 72.0 119 38.7
ATR0626G074 Amborella trichopoda HOM05D007254 ORTHO05D009002 9.6e-10 67.4 149 31.5
DCAR_004577 Daucus carota HOM05D007254 ORTHO05D009002 1.1e-08 63.9 170 30.0
CBR_g69680 Chara braunii HOM05D007254 ORTHO05D009002 2.4e-08 62.8 83 38.6
Aqoxy7G02676 Aquilegia oxysepala HOM05D007254 ORTHO05D009002 2.0e-07 59.7 157 28.0
TPR.G12004 Trifolium pratense HOM05D002718 ORTHO05D003269 2.6e-07 59.3 92 39.1
HPP92_018330 Vanilla planifolia HOM05D007254 ORTHO05D009002 2.6e-07 59.3 86 37.2
SEGI_23529 Sequoiadendron giganteum HOM05D007254 ORTHO05D009002 4.5e-07 58.5 90 34.4
Migut.A00450 Erythranthe guttata HOM05D007254 ORTHO05D009002 1.7e-06 56.6 103 38.8
Oeu008784.1 Olea europaea HOM05D007254 ORTHO05D009002 4.9e-06 55.1 100 34.0


User provided reference genes

Program Settings