Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.1e-40 169.5 85 100.0
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 3.6e-39 164.5 81 100.0
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.8e-38 162.2 80 100.0
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.8e-38 162.2 80 100.0
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.5e-37 159.1 80 98.8
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.7e-36 155.6 80 96.2
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.7e-36 155.6 80 96.2
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 3.8e-36 154.5 77 98.7
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 3.8e-36 154.5 77 98.7
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 3.8e-36 154.5 77 98.7
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 3.8e-36 154.5 77 98.7
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 3.8e-36 154.5 77 98.7
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.9e-35 152.1 77 97.4
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 4.2e-35 151.0 79 92.4
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 4.2e-35 151.0 83 88.0
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 5.4e-35 150.6 79 92.4
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 9.3e-35 149.8 79 91.1
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.2e-34 149.4 80 91.2
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.2e-34 149.4 80 91.2
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.2e-34 149.4 84 88.1
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.2e-34 149.4 77 96.1
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 2.1e-34 148.7 79 92.4
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.1e-34 148.7 80 90.0
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 2.1e-34 148.7 80 92.5
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.7e-34 148.3 80 90.0
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.7e-34 148.3 80 90.0
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 2.7e-34 148.3 80 87.5
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.7e-34 148.3 80 90.0
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 4.6e-34 147.5 77 90.9
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 4.6e-34 147.5 79 88.6
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 4.6e-34 147.5 86 84.9
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 4.6e-34 147.5 79 92.4
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 4.6e-34 147.5 79 89.9
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 4.6e-34 147.5 79 88.6
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 4.6e-34 147.5 77 90.9
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 4.6e-34 147.5 79 91.1
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 6.0e-34 147.1 80 88.8
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 6.0e-34 147.1 80 88.8
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 7.9e-34 146.7 80 88.8
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 7.9e-34 146.7 80 88.8
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 7.9e-34 146.7 79 89.9
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 7.9e-34 146.7 79 89.9
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 7.9e-34 146.7 79 89.9
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.9e-34 146.7 80 87.5
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 7.9e-34 146.7 80 87.5
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 7.9e-34 146.7 80 92.5
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 7.9e-34 146.7 80 88.8
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.0e-33 146.4 79 89.9
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 1.0e-33 146.4 81 85.2
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.0e-33 146.4 79 89.9
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.3e-33 146.0 77 90.9
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.8e-33 145.6 80 87.5
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.8e-33 145.6 80 86.2
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.3e-33 145.2 75 96.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.3e-33 145.2 75 96.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.3e-33 145.2 79 88.6
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.3e-33 145.2 80 90.0
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.3e-33 145.2 84 81.0
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 3.0e-33 144.8 77 92.2
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.0e-33 144.8 81 84.0
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.0e-33 144.8 77 88.3
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 3.0e-33 144.8 77 92.2
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 3.9e-33 144.4 77 90.9
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.9e-33 144.4 80 86.2
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 3.9e-33 144.4 77 90.9
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 5.1e-33 144.1 80 86.2
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.1e-33 144.1 77 88.3
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 6.7e-33 143.7 80 87.5
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 6.7e-33 143.7 80 87.5
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 6.7e-33 143.7 79 84.8
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 8.7e-33 143.3 79 87.3
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 8.7e-33 143.3 77 88.3
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.1e-32 142.9 79 87.3
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.5e-32 142.5 77 88.3
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.5e-32 142.5 79 86.1
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 1.9e-32 142.1 84 79.8
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.9e-32 142.1 80 86.2
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.9e-32 142.1 79 86.1
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.5e-32 141.7 80 85.0
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 4.3e-32 141.0 73 94.5
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 4.3e-32 141.0 77 83.1
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.3e-32 141.0 80 83.8
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 5.6e-32 140.6 75 89.3
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 7.4e-32 140.2 77 83.1
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 7.4e-32 140.2 77 83.1
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 7.4e-32 140.2 78 85.9
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 7.4e-32 140.2 78 85.9
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 9.6e-32 139.8 77 85.7
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 9.6e-32 139.8 78 85.9
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 9.6e-32 139.8 77 85.7
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 9.6e-32 139.8 75 90.7
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.3e-31 139.4 77 85.7
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.3e-31 139.4 79 83.5
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.3e-31 139.4 80 83.8
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.6e-31 139.0 80 82.5
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.6e-31 139.0 77 85.7
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.6e-31 139.0 80 83.8
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.8e-31 138.3 79 83.5
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 3.7e-31 137.9 79 83.5
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.7e-31 137.9 80 85.0
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 3.7e-31 137.9 75 88.0
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 4.8e-31 137.5 75 89.3
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 8.1e-31 136.7 80 82.5
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.4e-30 135.2 84 77.4
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 3.1e-30 134.8 78 83.3
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.0e-30 134.4 79 81.0
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 4.0e-30 134.4 81 84.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 5.3e-30 134.0 77 83.1
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.3e-30 134.0 77 81.8
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 9.0e-30 133.3 76 80.3
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 9.0e-30 133.3 77 80.5
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.2e-29 132.9 75 81.3
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 2.0e-29 132.1 75 84.0
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 3.4e-29 131.3 71 91.5
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 5.8e-29 130.6 77 74.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 7.6e-29 130.2 77 80.5
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 7.6e-29 130.2 77 80.5
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 9.9e-29 129.8 71 88.7
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.7e-28 129.0 76 82.9
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.8e-28 127.9 80 78.8
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.8e-28 127.9 80 78.8
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 6.4e-28 127.1 77 72.7
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.1e-27 126.3 70 81.4
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.1e-27 126.3 76 78.9
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.4e-27 125.9 77 71.4
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 5.5e-27 124.0 105 66.7
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.1e-25 117.5 70 82.9
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.1e-22 109.8 70 67.1
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 1.4e-22 109.4 75 61.3
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 4.0e-22 107.8 54 98.1
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 4.0e-22 107.8 71 74.6
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 9.0e-22 106.7 57 91.2
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 1.2e-21 106.3 56 92.9
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.7e-20 102.4 87 60.9
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 3.2e-19 98.2 52 90.4
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.0e-17 93.2 54 83.3
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 8.7e-17 90.1 88 50.0
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 2.8e-15 85.1 45 88.9
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 5.3e-14 80.9 69 52.2
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 5.3e-14 80.9 60 65.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.9e-12 75.1 81 44.4
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 8.5e-12 73.6 75 54.7
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 5.7e-08 60.8 29 96.6


User provided reference genes

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