Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.8e-216 755.0 376 100.0
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 3.9e-210 734.6 376 97.3
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.6e-195 686.0 382 88.2
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 4.3e-193 677.9 385 87.3
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 5.3e-191 671.0 381 87.1
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 6.9e-191 670.6 380 87.4
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 6.9e-191 670.6 380 87.4
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 3.4e-190 668.3 380 87.1
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 3.8e-189 664.8 380 86.6
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 3.8e-189 664.8 380 86.6
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 6.5e-189 664.1 385 85.5
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.7e-187 658.7 382 85.3
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 5.7e-185 651.0 382 84.8
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.8e-178 629.4 370 84.3
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-178 629.4 379 86.5
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.8e-176 622.1 383 80.2
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.9e-172 609.4 384 78.1
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.7e-171 605.5 323 89.5
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.5e-169 599.7 382 77.0
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 6.3e-168 594.3 380 77.9
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 8.2e-168 594.0 379 76.5
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-167 592.8 379 76.8
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 7.0e-167 590.9 379 76.3
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 6.5e-165 584.3 319 88.4
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 1.9e-164 582.8 380 75.0
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 7.2e-164 580.9 380 75.8
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.3e-162 575.9 320 85.0
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 3.4e-161 572.0 377 73.7
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 9.8e-161 570.5 332 88.6
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 5.9e-158 561.2 332 87.3
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.9e-156 556.2 373 72.4
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 6.1e-155 551.2 373 71.3
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 8.0e-155 550.8 322 80.7
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.0e-154 550.4 379 71.2
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.8e-154 549.7 380 71.6
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 2.3e-154 549.3 373 71.6
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 5.2e-154 548.1 372 72.6
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 6.8e-154 547.7 373 70.5
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 8.8e-154 547.4 372 71.8
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.0e-153 546.2 382 70.2
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.6e-153 545.8 381 70.3
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 5.7e-153 544.7 374 70.9
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 9.8e-153 543.9 320 81.6
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.2e-152 542.7 370 70.5
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.2e-152 542.7 383 70.0
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.7e-152 542.0 322 78.9
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 4.9e-152 541.6 375 71.2
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 4.9e-152 541.6 379 69.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 4.9e-152 541.6 375 70.1
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 4.9e-152 541.6 383 69.7
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 6.3e-152 541.2 385 70.4
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.1e-151 540.4 379 69.9
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.1e-151 540.4 313 79.2
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.4e-151 540.0 400 67.0
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 3.1e-151 538.9 323 76.8
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 3.1e-151 538.9 387 68.5
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 4.1e-151 538.5 373 71.0
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 5.4e-151 538.1 323 77.7
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 5.4e-151 538.1 380 69.5
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 5.4e-151 538.1 364 71.2
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 9.1e-151 537.3 375 70.9
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 9.1e-151 537.3 346 74.0
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.2e-150 537.0 373 69.2
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 1.6e-150 536.6 376 70.2
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 2.7e-150 535.8 373 70.0
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 2.7e-150 535.8 339 76.1
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.7e-150 535.8 373 70.5
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 5.9e-150 534.6 344 73.8
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 5.9e-150 534.6 352 71.9
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 5.9e-150 534.6 378 69.0
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 5.9e-150 534.6 383 70.2
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 5.9e-150 534.6 314 79.3
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 7.7e-150 534.3 384 69.3
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.0e-149 533.9 377 70.3
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.3e-149 533.5 376 70.5
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.3e-149 533.5 384 69.3
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.7e-149 533.1 383 69.5
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 2.3e-149 532.7 383 69.7
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.3e-149 532.7 374 70.9
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 2.9e-149 532.3 399 67.2
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 5.0e-149 531.6 383 67.6
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 5.0e-149 531.6 378 69.8
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 8.6e-149 530.8 314 76.8
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.5e-148 530.0 316 75.6
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.5e-148 530.0 382 68.6
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.9e-148 529.6 374 69.8
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.9e-148 529.6 394 67.0
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.5e-148 529.3 320 79.4
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.5e-148 529.3 308 79.5
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 3.3e-148 528.9 383 70.0
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 3.3e-148 528.9 367 70.8
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 6.1e-147 524.6 320 73.8
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 8.0e-147 524.2 316 74.7
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 1.8e-146 523.1 379 68.1
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 4.0e-146 521.9 373 67.0
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 6.8e-146 521.2 381 67.7
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 1.5e-145 520.0 392 66.3
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 3.4e-145 518.8 377 69.0
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 5.7e-145 518.1 383 66.8
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 7.5e-145 517.7 382 66.8
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 7.5e-145 517.7 372 68.3
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 4.9e-144 515.0 383 66.3
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.8e-143 513.1 371 67.1
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.8e-143 513.1 387 65.6
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 3.2e-143 512.3 323 74.0
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 7.0e-143 511.1 323 73.7
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.6e-142 510.0 337 70.6
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.3e-141 506.1 325 72.6
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 2.9e-141 505.8 377 66.3
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 8.6e-141 504.2 388 64.7
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.2e-139 500.4 326 71.8
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.5e-137 493.4 351 71.2
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 4.4e-137 491.9 352 66.2
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 3.2e-135 485.7 347 69.7
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 3.2e-135 485.7 299 72.6
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 2.0e-134 483.0 371 65.8
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.7e-134 482.6 344 67.4
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 1.7e-133 479.9 376 64.6
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 3.9e-133 478.8 308 69.2
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.5e-132 476.9 349 69.3
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 3.3e-132 475.7 370 63.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.5e-129 466.8 380 62.9
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 5.8e-129 464.9 373 63.3
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 1.1e-127 460.7 349 68.2
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 9.2e-127 457.6 323 70.6
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 3.0e-125 452.6 311 67.2
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 2.8e-123 446.0 292 69.2
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 1.3e-120 437.2 323 67.8
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 7.8e-118 427.9 347 64.0
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.0e-117 427.6 293 64.2
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 3.0e-117 426.0 241 81.3
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 9.6e-116 421.0 314 61.8
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 9.3e-111 404.4 324 59.9
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.1e-108 397.5 265 70.2
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 4.3e-108 395.6 325 56.9
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 3.4e-105 386.0 320 58.1
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 2.7e-102 376.3 294 65.6
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 2.7e-102 376.3 246 73.6
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.0e-101 374.4 311 61.4
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 1.8e-98 363.6 301 56.8
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.1e-95 354.4 260 67.3
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 7.1e-95 351.7 352 52.0
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.8e-91 339.7 233 67.8
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 5.3e-90 335.5 397 53.1
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 5.8e-89 332.0 201 76.1
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.8e-88 329.3 199 75.9
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 1.9e-87 327.0 216 73.1
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 4.1e-82 309.3 234 68.4
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-73 280.4 219 67.1
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 3.2e-71 273.1 222 65.3
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 6.1e-70 268.9 346 43.6
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.1e-63 248.1 294 44.6
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 4.2e-63 246.1 298 42.6
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.1e-60 238.0 318 42.8
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 9.4e-47 191.8 153 63.4
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 4.7e-46 189.5 114 72.8
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 4.8e-43 179.5 290 38.6
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 3.0e-37 160.2 132 63.6
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-36 157.5 95 80.0
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 3.4e-36 156.8 186 50.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 9.8e-36 155.2 132 62.1
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-35 154.8 92 80.4
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 8.3e-35 152.1 132 60.6
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-34 151.4 92 78.3
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 5.4e-34 149.4 94 77.7
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 6.8e-29 132.5 102 65.7
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 1.0e-24 118.6 69 78.3
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 3.9e-24 116.7 75 70.7
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 6.6e-24 115.9 71 71.8
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 2.5e-23 114.0 134 52.2
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 3.3e-23 113.6 92 65.2
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 9.5e-23 112.1 396 26.0
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 6.8e-21 105.9 120 48.3
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 5.8e-20 102.8 61 80.3
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.1e-18 98.6 59 72.9
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 3.0e-16 90.5 51 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 7.3e-15 85.9 245 31.0
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 4.4e-12 76.6 44 79.5
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 4.4e-12 76.6 44 79.5
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.9e-11 73.9 74 51.4
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 8.3e-11 72.4 41 78.0
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 9.2e-10 68.9 47 66.0
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 1.1e-07 62.0 99 42.4
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 1.2e-06 58.5 33 81.8
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 2.1e-06 57.8 39 66.7


User provided reference genes

Program Settings