Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.2e-263 911.8 454 100.0
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.7e-260 902.1 450 99.6
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 2.7e-258 894.8 454 98.2
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 1.0e-257 892.9 454 97.8
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.3e-255 885.9 455 97.6
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.5e-237 824.7 457 90.8
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 3.1e-230 801.6 454 90.5
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 3.1e-230 801.6 454 90.5
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 4.1e-230 801.2 456 91.0
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 2.7e-229 798.5 454 90.1
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.0e-228 796.6 451 90.2
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.3e-228 796.2 459 89.1
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.2e-223 778.9 456 89.7
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 1.8e-222 775.8 457 85.6
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 4.1e-222 774.6 452 87.4
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.5e-221 771.5 459 85.0
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 7.8e-221 770.4 457 84.9
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 8.6e-220 766.9 451 87.6
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 2.8e-218 761.9 454 87.0
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 2.0e-216 755.7 454 86.1
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 5.8e-208 727.6 451 83.8
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.5e-200 703.0 458 79.0
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 2.1e-189 666.0 450 77.8
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 3.9e-188 661.8 449 76.4
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.1e-186 656.0 458 72.9
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.1e-186 656.0 457 72.6
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 4.0e-185 651.7 449 75.3
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.2e-184 650.2 451 75.2
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 5.8e-184 647.9 465 71.2
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 3.8e-183 645.2 459 71.7
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.9e-182 642.9 451 74.1
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 5.4e-182 641.3 465 71.2
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 9.3e-182 640.6 460 70.4
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 9.3e-182 640.6 458 71.4
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.2e-181 640.2 458 71.4
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.1e-181 639.4 458 71.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.7e-181 639.0 458 71.4
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 6.0e-181 637.9 450 71.6
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.1e-179 633.6 457 70.9
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.5e-179 632.5 458 71.4
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 2.8e-178 629.0 459 69.5
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 8.1e-178 627.5 473 68.5
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 5.3e-177 624.8 452 74.8
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 9.0e-177 624.0 460 69.8
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 4.5e-176 621.7 458 69.7
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.3e-175 620.2 458 69.7
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 8.4e-175 617.5 457 68.5
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.4e-174 615.9 460 69.3
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 3.2e-174 615.5 439 71.5
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 7.1e-174 614.4 459 68.4
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.6e-173 613.2 458 68.3
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 1.0e-172 610.5 458 68.3
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.8e-172 609.8 460 68.9
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 2.3e-172 609.4 459 68.4
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.5e-171 605.9 460 68.7
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.5e-171 605.9 457 68.3
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 4.3e-171 605.1 460 68.9
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.6e-170 603.2 454 67.0
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.8e-170 602.4 460 68.7
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.7e-170 602.1 457 67.8
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 3.7e-170 602.1 468 67.1
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 3.7e-170 602.1 457 67.8
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 3.7e-170 602.1 463 68.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 6.2e-170 601.3 449 68.4
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.4e-169 600.1 450 67.3
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.2e-168 597.0 457 67.0
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.2e-168 597.0 457 66.1
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 3.4e-168 595.5 449 69.0
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.4e-168 595.5 477 66.2
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 9.9e-168 594.0 480 65.2
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.7e-167 593.2 482 65.4
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 4.9e-167 591.7 454 68.3
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.1e-166 590.5 447 69.1
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.9e-166 589.7 493 64.3
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 9.3e-166 587.4 458 66.2
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 9.3e-166 587.4 450 66.7
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 9.3e-166 587.4 445 67.2
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.2e-165 587.0 455 64.8
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.2e-165 587.0 342 87.1
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 1.2e-165 587.0 473 66.6
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.7e-165 585.9 458 67.2
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 3.5e-165 585.5 451 67.2
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.0e-164 583.9 457 66.5
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 6.7e-164 581.3 451 66.7
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 6.7e-164 581.3 457 66.7
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.5e-163 579.3 449 67.0
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 3.3e-163 578.9 460 66.5
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 5.6e-163 578.2 436 68.8
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 7.4e-163 577.8 454 66.5
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.3e-162 577.0 528 57.6
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.1e-162 576.2 445 66.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 8.2e-162 574.3 445 66.1
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.4e-161 573.5 448 64.7
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.8e-161 573.2 447 66.2
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 5.3e-161 571.6 485 62.7
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 5.3e-161 571.6 448 65.4
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 5.3e-161 571.6 448 64.5
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 5.3e-161 571.6 448 65.0
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 6.9e-161 571.2 450 65.6
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.2e-160 570.5 449 64.8
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.5e-160 570.1 430 67.2
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 5.8e-160 568.2 431 68.0
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 1.1e-158 563.9 457 65.0
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 2.1e-157 559.7 445 65.2
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.7e-157 559.3 445 65.2
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 6.0e-157 558.1 450 62.9
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.1e-155 553.9 448 63.4
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.3e-155 552.4 448 63.2
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 5.7e-155 551.6 449 63.7
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 9.7e-155 550.8 447 64.4
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.7e-154 548.9 409 68.2
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 6.3e-154 548.1 461 64.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.7e-151 540.0 455 64.8
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 3.8e-151 538.9 455 64.4
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 6.5e-151 538.1 526 54.6
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 8.5e-151 537.7 420 66.4
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.1e-147 527.3 459 60.3
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 3.3e-147 525.8 424 64.6
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.8e-143 512.3 446 62.6
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 3.8e-143 512.3 444 61.5
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 6.7e-140 501.5 465 58.7
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 9.7e-139 497.7 453 58.9
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.7e-138 496.9 444 59.2
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.0e-136 490.0 429 59.9
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.7e-136 488.0 436 61.5
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 3.8e-135 485.7 421 60.8
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.6e-131 473.0 398 63.8
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 2.2e-130 469.9 459 58.0
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 3.3e-123 446.0 289 76.8
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.9e-119 433.0 432 54.2
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 3.8e-119 432.6 517 50.7
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 9.4e-118 427.9 377 59.9
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 5.7e-115 418.7 324 66.4
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 4.5e-112 409.1 446 52.2
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 3.0e-108 396.4 456 50.2
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 4.4e-107 392.5 464 49.4
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.2e-101 374.4 458 46.7
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.2e-100 369.0 250 74.0
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.3e-92 343.6 319 58.9
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.7e-90 336.3 317 59.9
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.1e-88 330.5 194 85.1
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 3.0e-79 300.1 194 76.8
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 4.0e-76 289.7 459 41.6
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 4.6e-72 276.2 217 64.5
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 7.8e-72 275.4 332 47.6
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.5e-70 271.2 291 52.6
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 3.4e-67 260.0 526 35.7
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.4e-67 259.6 193 66.8
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.9e-65 254.2 191 66.5
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 5.1e-63 246.1 186 66.1
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.9e-62 244.2 152 79.6
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 9.0e-60 235.3 237 57.0
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.4e-57 228.0 263 50.6
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 2.1e-56 224.2 118 94.1
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.1e-48 197.6 279 43.7
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.7e-48 197.2 220 50.9
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.8e-45 187.2 170 57.6
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.5e-43 181.4 129 71.3
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 2.6e-43 180.6 319 35.7
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.2e-42 177.6 137 66.4
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 3.9e-39 166.8 303 34.3
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 1.3e-34 151.8 293 33.8
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.6e-32 144.8 154 53.9
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.7e-32 144.1 167 46.1
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.6e-27 127.5 79 84.8
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 5.0e-26 123.2 87 65.5
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 2.1e-24 117.9 78 69.2
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.4e-23 115.2 114 57.9
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 8.8e-23 112.5 73 79.5
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 1.5e-19 101.7 156 44.9
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.6e-19 100.9 116 53.4
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 6.5e-18 96.3 130 46.2
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 7.0e-12 76.3 108 45.4
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 5.9e-11 73.2 51 70.6
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.2e-10 71.2 53 73.6
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.1e-09 68.9 47 74.5
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.5e-09 68.6 63 63.5
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 3.2e-09 67.4 76 52.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-08 65.1 63 52.4
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 1.8e-07 61.6 72 47.2
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 1.5e-06 58.5 36 69.4
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 1.5e-06 58.5 154 30.5
Glyma.02G160100 Glycine max HOM05D002054 ORTHO05D005362 5.7e-06 56.6 148 28.4
ECA232G0254 Erigeron canadensis HOM05D002054 ORTHO05D005362 9.7e-06 55.8 156 29.5
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 9.7e-06 55.8 154 28.6


User provided reference genes

Program Settings