Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 8.3e-258 893.3 476 100.0
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 4.6e-256 887.5 476 99.6
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 4.5e-219 764.6 490 87.1
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 5.3e-204 714.5 491 81.9
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 4.5e-195 684.9 450 85.3
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 4.5e-195 684.9 450 85.3
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.2e-192 676.8 515 75.9
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 2.3e-175 619.4 512 71.9
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 3.7e-165 585.5 494 70.6
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.6e-160 570.1 511 67.5
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.0e-151 540.8 508 64.2
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.3e-141 507.3 448 67.0
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.5e-137 493.8 565 57.3
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 7.6e-118 428.3 503 52.7
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 1.8e-106 390.6 543 48.6
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.8e-98 364.0 540 46.1
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.5e-97 360.9 529 46.7
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.8e-95 354.0 532 45.7
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 2.6e-94 350.1 522 45.2
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 5.8e-94 349.0 507 49.1
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.7e-93 347.4 528 45.8
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.7e-93 347.4 539 46.0
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.4e-92 344.4 528 44.9
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.4e-92 344.4 513 44.6
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 1.9e-92 344.0 517 46.0
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 4.2e-92 342.8 543 44.4
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.6e-91 340.9 535 43.6
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 6.0e-91 339.0 522 44.3
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 7.9e-91 338.6 541 44.7
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 7.9e-91 338.6 523 43.0
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 7.9e-91 338.6 545 44.6
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.0e-90 338.2 528 44.5
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.8e-90 337.4 533 44.5
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.1e-89 334.7 520 44.2
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.9e-89 334.0 533 45.0
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 3.3e-89 333.2 532 44.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 3.3e-89 333.2 587 42.2
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.3e-89 332.8 538 44.4
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 8.2e-88 328.6 518 45.8
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.8e-87 327.4 517 45.3
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.8e-87 327.4 513 44.6
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.4e-87 327.0 526 43.9
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.4e-87 327.0 531 44.4
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.4e-87 327.0 541 42.7
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.2e-86 324.7 543 43.8
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 2.0e-86 323.9 557 43.3
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.6e-86 323.6 539 43.2
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 5.9e-86 322.4 546 43.2
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 5.9e-86 322.4 507 44.4
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.3e-85 321.2 526 43.7
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 8.5e-85 318.5 500 45.6
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.5e-84 317.0 534 42.5
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 2.5e-84 317.0 558 44.6
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 5.5e-84 315.8 519 45.3
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 5.5e-84 315.8 527 43.5
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 6.1e-83 312.4 542 43.2
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.3e-82 311.2 528 43.9
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 3.0e-82 310.1 487 45.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 3.9e-82 309.7 555 44.1
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.5e-81 307.8 516 43.6
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.5e-81 307.8 534 42.5
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.9e-81 307.4 535 44.3
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.9e-81 307.4 549 43.0
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 5.7e-81 305.8 527 44.4
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 5.7e-81 305.8 531 40.1
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 7.4e-81 305.4 509 42.8
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 9.7e-81 305.1 547 42.2
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.6e-80 304.3 523 43.0
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 2.2e-80 303.9 566 39.9
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 2.8e-80 303.5 544 42.5
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 2.8e-80 303.5 523 42.6
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 4.8e-80 302.8 529 39.7
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 1.4e-79 301.2 570 39.8
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.4e-79 301.2 527 39.5
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 3.1e-79 300.1 507 44.0
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.0e-78 297.4 531 41.6
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.9e-78 295.8 531 41.4
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.0e-77 295.0 551 40.7
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.0e-77 295.0 544 40.6
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.7e-77 294.3 573 39.3
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.7e-77 294.3 246 73.2
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.2e-77 293.9 527 40.8
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 3.8e-77 293.1 537 42.1
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 5.5e-76 289.3 566 39.2
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 9.4e-76 288.5 582 39.3
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 2.1e-75 287.3 525 41.1
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.0e-74 283.5 586 38.6
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 4.4e-73 279.6 462 42.4
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 5.7e-73 279.3 542 39.1
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 7.4e-73 278.9 637 38.3
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 5.0e-69 266.2 544 37.9
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.4e-66 258.1 563 38.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.3e-66 257.3 527 38.9
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 3.9e-66 256.5 519 38.3
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.3e-64 251.5 440 42.5
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.4e-63 248.1 457 40.5
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 2.0e-62 244.2 573 36.1
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 5.9e-62 242.7 515 38.1
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.0e-61 239.6 331 45.0
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 6.7e-58 229.2 525 37.3
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.8e-56 223.8 512 35.7
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 3.7e-56 223.4 463 37.6
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 1.8e-55 221.1 293 44.4
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.2e-53 214.2 289 44.3
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 3.2e-52 210.3 543 34.6
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 6.1e-51 206.1 554 34.8
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.3e-50 204.1 468 37.0
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.0e-49 201.1 537 35.0
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 1.3e-48 198.4 269 43.1
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 2.3e-45 187.6 528 33.7
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.2e-43 181.8 376 38.6
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 3.0e-42 177.2 448 35.7
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.5e-41 174.9 321 35.8
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.6e-35 154.8 475 32.4
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 2.8e-35 154.1 395 34.9
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 4.0e-34 150.2 556 29.3
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 6.8e-34 149.4 564 28.4
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.3e-29 134.4 438 32.6
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 6.6e-29 132.9 175 40.6
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.9e-28 131.3 439 33.5
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 3.6e-27 127.1 234 37.6
C03p92730 Brassica napus HOM05D002452 ORTHO05D006766 3.9e-21 107.1 65 87.7
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 8.6e-21 105.9 416 29.8
A06p29200 Brassica napus HOM05D000817 ORTHO05D000702 4.0e-18 97.1 52 94.2
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.5e-17 95.1 141 34.8
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.7e-16 91.7 202 34.2
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 6.6e-13 79.7 175 41.1
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 2.5e-12 77.8 61 57.4
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.6e-11 75.1 100 48.0
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 3.6e-11 73.9 115 47.0
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 5.2e-10 70.1 238 29.8
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 3.4e-09 67.4 206 32.5
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 6.4e-08 63.2 255 32.5
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 8.4e-08 62.8 208 31.7


User provided reference genes

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