Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 3.9e-150 535.0 325 100.0
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 2.5e-141 505.8 326 93.9
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-135 486.9 330 85.5
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-135 486.9 330 85.5
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.2e-135 486.9 330 85.5
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 2.2e-124 449.5 330 77.9
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 3.4e-117 425.6 342 81.9
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.6e-114 416.8 326 81.0
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.6e-114 416.8 328 80.5
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-114 416.4 328 80.2
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 5.9e-114 414.8 326 80.1
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 7.7e-114 414.5 326 79.8
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 8.5e-113 411.0 335 78.5
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 4.2e-112 408.7 353 76.5
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.7e-111 406.0 348 77.9
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 3.6e-111 405.6 353 79.3
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 3.6e-111 405.6 351 76.4
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 8.0e-111 404.4 325 72.6
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 4.9e-108 395.2 353 75.1
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.3e-105 387.1 345 77.7
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.1e-104 384.0 355 74.6
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-102 377.1 350 74.3
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-102 377.1 350 74.3
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 1.4e-102 377.1 350 74.3
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 6.4e-84 315.1 334 62.0
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.2e-77 294.3 346 57.5
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.1e-72 277.7 342 55.6
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.5e-72 276.6 343 53.6
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 4.3e-72 275.8 334 53.3
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 4.7e-71 272.3 337 53.7
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 4.7e-71 272.3 336 52.1
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 1.3e-68 264.2 331 58.3
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.7e-68 263.8 337 58.8
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 3.8e-68 262.7 339 56.6
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 3.5e-66 256.1 341 53.1
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 4.3e-64 249.2 354 52.3
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 4.3e-64 249.2 359 46.2
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 5.6e-64 248.8 353 49.3
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 9.6e-64 248.1 345 54.2
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 2.1e-63 246.9 367 46.9
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 2.8e-63 246.5 354 44.1
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 2.4e-62 243.4 338 48.2
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 2.4e-62 243.4 338 48.2
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 2.4e-62 243.4 338 48.2
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 5.3e-62 242.3 346 47.4
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 6.9e-62 241.9 336 45.2
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 9.0e-62 241.5 335 49.0
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 4.5e-61 239.2 360 49.2
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 7.6e-61 238.4 325 48.3
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 1.3e-60 237.7 327 48.3
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.3e-60 237.7 356 47.5
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.3e-60 237.7 356 44.4
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 1.3e-60 237.7 346 51.4
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 2.9e-60 236.5 327 46.2
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 3.8e-60 236.1 332 48.8
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.8e-60 236.1 358 44.1
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 6.4e-60 235.3 341 48.7
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 6.4e-60 235.3 346 50.3
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 8.4e-60 235.0 357 44.8
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 8.4e-60 235.0 356 44.1
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 1.1e-59 234.6 362 46.1
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 1.4e-59 234.2 369 46.9
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.9e-59 233.8 370 45.7
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 2.4e-59 233.4 341 51.0
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.4e-59 233.4 363 45.2
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 3.2e-59 233.0 350 48.0
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 4.2e-59 232.6 341 46.0
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 4.2e-59 232.6 364 45.6
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.4e-59 232.3 349 44.7
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 5.4e-59 232.3 343 43.7
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 3.5e-58 229.6 327 45.9
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 6.0e-58 228.8 367 41.4
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 7.9e-58 228.4 356 43.8
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 7.9e-58 228.4 362 44.2
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 1.0e-57 228.0 355 42.0
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.3e-57 227.6 342 43.0
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.8e-57 227.3 343 45.5
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 6.7e-57 225.3 361 46.8
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 3.3e-56 223.0 346 43.1
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.3e-56 223.0 352 43.2
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 5.6e-56 222.2 362 42.8
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 9.6e-56 221.5 366 47.8
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.3e-55 221.1 362 45.6
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 1.3e-55 221.1 368 44.8
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 1.3e-55 221.1 358 42.7
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.6e-55 220.7 372 44.4
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 6.2e-55 218.8 113 100.0
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 8.1e-55 218.4 348 49.7
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.8e-54 217.2 327 44.6
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 3.1e-54 216.5 344 45.6
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.1e-54 216.5 349 49.3
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 2.0e-53 213.8 365 44.4
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 3.4e-53 213.0 346 47.1
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 4.5e-53 212.6 360 46.7
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 5.8e-53 212.2 363 47.7
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.3e-52 211.1 337 47.2
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.3e-52 211.1 348 55.2
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.7e-52 210.7 336 50.6
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.2e-52 210.3 344 46.5
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 8.4e-52 208.4 343 43.4
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.1e-51 208.0 339 46.3
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 2.4e-51 206.8 360 46.7
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 2.4e-51 206.8 363 44.1
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 3.2e-51 206.5 368 40.2
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.2e-50 204.5 378 45.2
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.6e-50 204.1 336 44.6
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 2.7e-50 203.4 332 50.3
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 3.3e-48 196.4 368 40.2
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.1e-47 193.7 341 38.4
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 3.7e-47 193.0 329 43.8
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 2.4e-46 190.3 372 44.4
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.4e-46 190.3 320 42.8
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 3.1e-46 189.9 341 43.1
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 6.9e-46 188.7 345 49.6
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.2e-45 188.0 333 45.6
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 5.8e-45 185.7 323 41.8
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.3e-44 184.5 321 43.0
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.7e-44 184.1 318 40.6
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.2e-44 183.7 331 42.9
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 4.9e-44 182.6 333 42.9
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 6.5e-44 182.2 364 47.3
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 6.5e-44 182.2 275 41.8
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.5e-44 182.2 303 42.2
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 8.4e-44 181.8 345 40.0
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 8.4e-44 181.8 319 43.3
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.4e-43 181.0 335 40.6
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 2.7e-42 176.8 350 44.9
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 6.0e-42 175.6 276 43.8
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.3e-41 174.5 325 42.5
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.5e-40 171.0 331 38.1
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.5e-40 171.0 321 46.1
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 5.7e-40 169.1 185 56.8
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.6e-39 167.5 348 43.4
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 2.1e-39 167.2 362 36.7
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 4.8e-39 166.0 177 53.7
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 6.3e-39 165.6 339 41.9
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.1e-38 164.9 344 41.0
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 1.1e-38 164.9 320 39.7
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.8e-38 164.1 318 37.7
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.8e-38 164.1 351 38.5
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.4e-38 163.7 348 40.5
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 3.1e-38 163.3 351 40.5
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 1.2e-37 161.4 298 41.9
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.2e-35 153.3 330 39.1
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.6e-34 151.0 184 47.8
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 1.0e-33 148.3 273 41.8
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.3e-33 147.9 313 41.2
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 2.5e-32 143.7 292 41.8
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 2.5e-32 143.7 221 42.5
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 9.7e-32 141.7 346 32.9
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 9.7e-32 141.7 338 39.3
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.8e-30 137.5 296 49.3
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 3.1e-30 136.7 319 34.5
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 2.6e-29 133.7 326 35.0
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.0e-28 131.7 192 44.8
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 1.0e-28 131.7 360 33.3
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 3.8e-28 129.8 404 31.4
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 6.5e-28 129.0 342 34.2
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 2.5e-27 127.1 420 31.2
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.2e-26 124.8 358 45.5
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 6.1e-26 122.5 337 41.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 1.8e-25 120.9 328 32.6
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 7.4e-24 115.5 337 45.4
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 2.4e-22 110.5 249 34.5
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.5e-21 107.8 317 34.1
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.0e-17 95.1 351 41.9
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 3.0e-17 93.6 169 37.3
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-13 81.6 94 48.9
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 2.7e-10 70.5 90 45.6
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 4.7e-10 69.7 53 62.3
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 4.7e-10 69.7 53 62.3
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 8.0e-10 68.9 179 33.5
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 8.8e-09 65.5 190 30.0
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.2e-07 60.8 156 38.5
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 9.1e-06 55.5 126 32.5


User provided reference genes

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