Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 3.7e-171 604.7 300 100.0
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 2.9e-163 578.6 300 95.0
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 7.0e-162 573.9 300 94.3
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 1.7e-160 569.3 310 91.6
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 2.0e-156 555.8 310 89.0
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.3e-155 553.1 310 88.1
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 2.9e-155 552.0 310 87.7
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 2.4e-154 548.9 310 89.4
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 6.0e-153 544.3 311 88.1
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.0e-152 543.5 310 87.1
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 1.5e-151 539.7 347 79.8
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 6.2e-150 534.3 310 85.2
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 1.3e-147 526.6 300 86.0
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 3.8e-139 498.4 310 79.0
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 2.4e-130 469.2 304 80.6
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 5.1e-128 461.5 305 72.8
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 2.5e-127 459.1 307 71.7
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 2.1e-126 456.1 307 72.3
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 1.4e-125 453.4 310 71.0
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 1.8e-125 453.0 308 72.4
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 7.6e-124 447.6 305 71.8
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.7e-123 446.4 304 70.4
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.9e-123 445.7 305 70.5
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 2.9e-123 445.7 305 70.5
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 6.4e-123 444.5 305 70.2
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 2.4e-122 442.6 305 69.8
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 5.5e-122 441.4 308 71.1
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 5.5e-122 441.4 310 69.0
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.2e-121 440.3 305 69.8
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 1.6e-121 439.9 313 69.6
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 3.5e-121 438.7 304 69.7
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 7.9e-121 437.6 304 70.7
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 1.3e-120 436.8 310 67.4
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 2.3e-120 436.0 324 66.4
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 3.0e-120 435.6 305 69.2
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 6.7e-120 434.5 310 68.1
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.1e-119 433.7 311 67.8
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 1.5e-119 433.3 303 70.0
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 1.5e-119 433.3 305 69.5
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.5e-119 432.6 306 68.0
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 3.3e-119 432.2 306 68.0
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 4.3e-119 431.8 310 68.1
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 9.6e-119 430.6 305 68.5
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 8.1e-118 427.6 306 66.3
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 1.1e-117 427.2 310 65.8
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 1.4e-117 426.8 305 68.5
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 6.9e-117 424.5 309 66.7
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 4.5e-116 421.8 310 65.2
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 7.6e-116 421.0 303 66.7
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.0e-115 420.6 308 65.9
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 3.8e-115 418.7 280 71.4
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 6.5e-115 417.9 306 67.6
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 1.1e-114 417.2 336 62.5
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 2.5e-114 416.0 307 64.8
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 7.1e-114 414.5 308 65.3
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.3e-114 414.1 310 64.5
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 2.1e-113 412.9 295 65.4
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.6e-113 411.8 310 63.9
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 4.6e-113 411.8 302 65.2
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 7.9e-113 411.0 309 65.4
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.3e-112 409.5 315 63.2
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 3.9e-112 408.7 305 64.9
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 5.1e-112 408.3 306 64.4
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 1.1e-111 407.1 308 64.3
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 1.1e-111 407.1 306 64.4
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 1.5e-111 406.8 308 63.6
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 1.9e-111 406.4 302 66.2
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 3.3e-111 405.6 297 65.0
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 4.3e-111 405.2 276 69.2
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 4.3e-111 405.2 306 64.1
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 7.4e-111 404.4 307 62.2
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 7.4e-111 404.4 306 65.0
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 7.4e-111 404.4 308 63.3
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.3e-110 403.7 281 70.1
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 1.3e-110 403.7 336 58.0
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 2.8e-110 402.5 307 60.6
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 2.8e-110 402.5 305 63.6
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 1.8e-109 399.8 340 60.0
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 3.4e-108 395.6 308 62.7
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 5.9e-108 394.8 305 63.3
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 1.3e-107 393.7 337 58.5
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 6.5e-107 391.3 312 61.9
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.1e-106 390.6 310 63.2
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 3.2e-106 389.0 302 61.3
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 7.2e-106 387.9 305 62.3
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 4.8e-102 375.2 285 67.4
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 6.3e-102 374.8 322 58.4
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 8.2e-102 374.4 292 60.3
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.1e-101 374.0 282 67.7
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.4e-98 363.6 289 64.4
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 3.2e-98 362.5 283 62.5
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 4.2e-98 362.1 311 59.5
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 3.0e-96 355.9 365 51.2
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 3.8e-91 339.0 286 58.7
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 1.0e-88 330.9 313 54.3
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 1.4e-88 330.5 281 60.1
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 2.3e-88 329.7 311 57.2
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 4.4e-87 325.5 306 54.2
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 5.3e-85 318.5 305 54.4
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 5.0e-83 312.0 305 54.4
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 4.2e-82 308.9 302 52.6
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 5.2e-80 302.0 220 67.3
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 5.2e-80 302.0 234 62.8
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 5.7e-79 298.5 251 60.6
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.2e-76 290.8 283 54.4
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.2e-76 290.8 300 50.0
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 4.1e-69 265.8 310 44.8
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 1.7e-67 260.4 182 68.1
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 1.3e-62 244.2 182 62.6
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.7e-62 243.8 213 56.8
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 4.1e-61 239.2 192 64.1
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 9.2e-61 238.0 183 58.5
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.6e-60 237.3 167 70.1
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.1e-58 231.1 198 58.6
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 4.9e-54 215.7 235 52.3
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 1.3e-51 207.6 397 34.8
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 4.7e-49 199.1 295 39.3
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 6.8e-48 195.3 126 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 1.7e-46 190.7 206 50.0
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 4.9e-46 189.1 157 56.1
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 7.8e-44 181.8 161 55.9
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.0e-39 167.2 131 62.6
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 7.1e-37 158.7 285 35.8
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 5.6e-34 149.1 103 66.0
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 1.3e-30 137.9 281 31.0
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 8.4e-30 135.2 267 33.0
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 6.0e-28 129.0 101 60.4
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 3.1e-24 116.7 83 63.9
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 6.4e-22 109.0 135 45.2
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.8e-16 90.9 82 56.1
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 2.1e-12 77.4 59 61.0
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 6.0e-12 75.9 71 57.7
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.8e-11 74.3 77 49.4
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 6.7e-11 72.4 65 56.9
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 4.3e-10 69.7 144 33.3
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 4.8e-09 66.2 36 83.3
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 9.0e-08 62.0 49 53.1


User provided reference genes

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