Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 1.8e-124 449.5 266 100.0
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 2.7e-120 435.6 267 93.3
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 3.5e-120 435.3 267 97.4
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 8.5e-111 404.1 269 88.8
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 1.3e-95 353.6 275 82.9
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 1.9e-94 349.7 267 83.5
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.1e-93 346.3 276 81.5
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 8.0e-93 344.4 210 93.3
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 3.4e-91 339.0 274 75.2
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 9.8e-91 337.4 270 80.0
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 8.3e-90 334.3 276 77.5
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 7.0e-89 331.3 272 71.3
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 3.5e-88 328.9 266 77.1
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 1.2e-85 320.5 269 77.3
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 4.0e-84 315.5 271 76.0
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 6.8e-84 314.7 271 75.6
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 2.0e-83 313.2 271 74.9
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 4.2e-65 252.3 286 67.1
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 4.0e-60 235.7 253 66.0
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 1.8e-47 193.7 281 48.0
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 1.5e-46 190.7 135 83.0
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 4.0e-44 182.6 262 46.6
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 4.5e-43 179.1 258 49.2
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 2.9e-42 176.4 272 47.8
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 1.4e-41 174.1 258 48.8
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 1.4e-41 174.1 258 48.8
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 1.9e-41 173.7 258 45.7
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 2.1e-40 170.2 268 44.8
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 1.3e-39 167.5 274 43.1
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 1.3e-39 167.5 272 44.1
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 1.8e-39 167.2 271 43.5
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 1.8e-39 167.2 271 43.5
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 1.8e-39 167.2 273 42.1
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 3.0e-39 166.4 260 45.8
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 2.2e-37 160.2 257 45.9
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 2.2e-37 160.2 257 45.9
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 3.7e-37 159.5 268 45.1
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 8.5e-34 148.3 237 45.6
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 1.9e-33 147.1 260 41.9
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 5.5e-33 145.6 271 42.4
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 2.3e-31 140.2 262 40.1
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 8.8e-31 138.3 265 37.7
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 1.9e-30 137.1 270 40.4
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 7.4e-30 135.2 267 39.7
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 9.7e-30 134.8 257 38.5
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.3e-29 134.4 267 38.2
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.8e-29 133.3 268 38.4
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 6.3e-29 132.1 266 37.6
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.1e-28 131.3 268 44.4
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.1e-28 131.3 268 37.7
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.5e-27 127.5 259 35.5
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 5.9e-27 125.6 198 44.9
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 1.7e-26 124.0 261 36.4
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 2.2e-26 123.6 269 39.4
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 3.8e-26 122.9 273 38.5
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 8.5e-26 121.7 273 37.4
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 1.1e-25 121.3 257 36.2
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 1.9e-25 120.6 267 33.7
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 3.2e-25 119.8 275 32.4
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 3.2e-25 119.8 262 35.1
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 5.5e-25 119.0 262 38.9
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 5.5e-25 119.0 257 34.6
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 7.2e-25 118.6 262 38.9
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 2.1e-24 117.1 268 39.2
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 3.6e-24 116.3 273 34.8
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 4.7e-24 115.9 258 42.2
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 4.7e-24 115.9 265 34.7
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 6.1e-24 115.5 266 33.1
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 6.1e-24 115.5 264 34.8
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 7.9e-24 115.2 266 33.1
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 7.9e-24 115.2 261 40.2
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 7.9e-24 115.2 270 34.1
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 7.9e-24 115.2 268 38.4
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 1.0e-23 114.8 287 34.8
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 1.4e-23 114.4 273 35.5
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 1.4e-23 114.4 279 32.6
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.8e-23 114.0 266 33.1
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 3.0e-23 113.2 274 36.5
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 3.0e-23 113.2 278 34.9
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 3.0e-23 113.2 266 38.3
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 3.9e-23 112.8 298 39.3
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 5.1e-23 112.5 271 33.9
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 5.1e-23 112.5 258 34.9
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 8.8e-23 111.7 287 34.8
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 8.8e-23 111.7 270 37.8
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 1.5e-22 110.9 268 38.1
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 4.4e-22 109.4 260 33.8
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 5.7e-22 109.0 264 33.3
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 5.7e-22 109.0 272 40.1
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 7.4e-22 108.6 271 33.2
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 9.7e-22 108.2 260 33.1
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 9.7e-22 108.2 263 35.4
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 9.7e-22 108.2 272 33.1
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 9.7e-22 108.2 287 35.9
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 1.7e-21 107.5 267 38.6
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 1.7e-21 107.5 296 32.8
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 4.8e-21 105.9 279 34.1
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 4.8e-21 105.9 266 38.0
BcaC08g47296 Brassica carinata HOM05D003173 ORTHO05D003546 1.4e-20 104.4 68 94.1
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 1.4e-20 104.4 262 32.1
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 2.4e-20 103.6 294 41.8
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 3.1e-20 103.2 267 32.2
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 5.3e-20 102.4 272 31.6
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 6.9e-20 102.1 265 35.5
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 1.2e-19 101.3 269 31.6
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.5e-19 100.9 265 33.2
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 1.5e-19 100.9 259 34.0
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 2.6e-19 100.1 259 35.5
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 2.6e-19 100.1 260 35.0
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 2.2e-18 97.1 296 33.1
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 2.9e-18 96.7 277 32.5
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 2.9e-18 96.7 264 33.0
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 3.8e-18 96.3 274 38.3
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 5.0e-18 95.9 269 30.5
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 5.0e-18 95.9 276 36.6
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 5.0e-18 95.9 269 39.8
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 8.5e-18 95.1 279 30.5
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 8.5e-18 95.1 270 33.0
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 1.4e-17 94.4 256 31.6
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 3.2e-17 93.2 303 30.0
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 9.4e-17 91.7 264 31.8
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.2e-16 91.3 265 31.3
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 1.2e-16 91.3 264 33.7
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 1.6e-16 90.9 255 31.0
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.6e-16 90.9 265 34.3
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.6e-16 90.9 265 35.5
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.1e-16 90.5 271 34.3
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 2.1e-16 90.5 265 34.0
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 2.7e-16 90.1 264 30.7
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 2.7e-16 90.1 280 30.7
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 6.1e-16 89.0 274 32.5
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.0e-15 88.2 271 33.9
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 2.3e-15 87.0 258 30.2
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 3.0e-15 86.7 181 39.2
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 3.0e-15 86.7 267 30.0
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 5.2e-15 85.9 262 30.9
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 5.2e-15 85.9 271 33.6
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 6.7e-15 85.5 282 31.6
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 8.8e-15 85.1 266 35.7
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 1.1e-14 84.7 264 30.7
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 1.5e-14 84.3 263 36.1
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 3.3e-14 83.2 282 29.8
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.3e-14 83.2 274 31.8
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 5.7e-14 82.4 269 29.4
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 1.3e-13 81.3 215 29.3
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 2.8e-13 80.1 307 27.7
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 4.8e-13 79.3 238 31.5
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 1.8e-12 77.4 269 30.1
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 2.4e-12 77.0 185 32.4
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.4e-12 77.0 258 31.0
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 3.1e-12 76.6 266 31.2
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 1.2e-11 74.7 203 34.5
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 4.5e-11 72.8 272 27.9
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 5.9e-11 72.4 287 27.9
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 1.3e-10 71.2 288 26.0
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 5.0e-10 69.3 217 30.4
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 6.5e-10 68.9 108 55.6
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 8.5e-10 68.6 246 30.5
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 1.1e-09 68.2 279 27.6
BcaB01g00240 Brassica carinata HOM05D003173 ORTHO05D003546 1.9e-09 67.4 160 36.9
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 1.9e-09 67.4 267 28.5
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.9e-09 67.4 203 31.0
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 1.9e-09 67.4 214 29.9
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 2.5e-09 67.0 246 30.5
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 5.5e-09 65.9 250 28.4
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 7.2e-09 65.5 223 28.7
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 9.4e-09 65.1 124 45.2
Gohir.A12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 9.4e-09 65.1 183 30.1
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 9.4e-09 65.1 246 30.1
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 9.4e-09 65.1 241 29.9
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 1.2e-08 64.7 182 35.2
Gohir.D12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.2e-08 64.7 182 29.1
Gorai.008G061700 Gossypium raimondii HOM05D003173 ORTHO05D003546 2.1e-08 63.9 182 29.1
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 3.6e-08 63.2 182 31.9
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 4.7e-08 62.8 280 28.6
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 6.1e-08 62.4 205 28.8
CANSAT25G0622 Cannabis sativa HOM05D003173 ORTHO05D003546 8.0e-08 62.0 256 28.9
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.0e-07 61.6 181 32.6
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 1.0e-07 61.6 215 33.0
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 1.4e-07 61.2 149 36.2
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 2.3e-07 60.5 274 26.6
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 3.0e-07 60.1 200 30.5
TPR.G32014 Trifolium pratense HOM05D003173 ORTHO05D003546 1.2e-06 58.2 180 32.8
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 1.5e-06 57.8 212 27.8
Ciclev10027470m.g Citrus clementina HOM05D003173 ORTHO05D003546 2.0e-06 57.4 179 32.4


User provided reference genes

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