Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p40000 Brassica napus HOM05D000278 ORTHO05D033088 4.4e-30 134.0 71 100.0
A03p01790 Brassica napus HOM05D000278 ORTHO05D033088 1.8e-15 85.5 44 100.0
SHI25343 Sapria himalayana HOM05D000278 ORTHO05D004794 1.5e-09 65.9 49 71.4
AL3G23390 Arabidopsis lyrata HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
AT3G11830 Arabidopsis thaliana HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
BcaB04g18663 Brassica carinata HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
BcaB04g21115 Brassica carinata HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
BcaB06g25572 Brassica carinata HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
BcaC01g04077 Brassica carinata HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
BcaC09g48192 Brassica carinata HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
A03p37310 Brassica napus HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
BolC1t05287H Brassica oleracea HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
BraA01t04158Z Brassica rapa HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
BraA03t12891Z Brassica rapa HOM05D000278 ORTHO05D004794 2.5e-09 65.1 82 56.1
Aa31LG3G5320 Aethionema arabicum HOM05D000278 ORTHO05D004794 3.3e-09 64.7 82 54.9
Aqoxy6G02051 Aquilegia oxysepala HOM05D000278 ORTHO05D004794 4.3e-09 64.3 50 70.0
Thhalv10020422m.g Eutrema salsugineum HOM05D000278 ORTHO05D004794 4.3e-09 64.3 83 54.2
MD03G1164100 Malus domestica HOM05D000278 ORTHO05D004794 4.3e-09 64.3 50 70.0
QL05p031917 Quercus lobata HOM05D000015 ORTHO05D005621 4.3e-09 64.3 37 86.5
Ah.04g164010 Amaranthus hybridus HOM05D000278 ORTHO05D004794 5.6e-09 63.9 50 70.0
Carub.0003s1118 Capsella rubella HOM05D000278 ORTHO05D004794 5.6e-09 63.9 82 54.9
Ciclev10014771m.g Citrus clementina HOM05D000278 ORTHO05D004794 5.6e-09 63.9 55 65.5
Duzib264G0906 Durio zibethinus HOM05D000278 ORTHO05D004794 5.6e-09 63.9 50 70.0
Gohir.A11G230300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 5.6e-09 63.9 50 70.0
Gohir.D11G229500 Gossypium hirsutum HOM05D000278 ORTHO05D004794 5.6e-09 63.9 50 70.0
Gorai.003G068300 Gossypium raimondii HOM05D000278 ORTHO05D004794 5.6e-09 63.9 50 70.0
Hma1.2p1_1466F.1_g285420 Hydrangea macrophylla HOM05D000278 ORTHO05D004794 5.6e-09 63.9 55 65.5
Lsat_1_v5_gn_5_64940 Lactuca sativa HOM05D000278 ORTHO05D004794 5.6e-09 63.9 55 65.5
Manes.11G109600 Manihot esculenta HOM05D000278 ORTHO05D004794 5.6e-09 63.9 50 70.0
QL01p020501 Quercus lobata HOM05D000278 ORTHO05D004794 5.6e-09 63.9 50 70.0
Sc03g0004270 Simmondsia chinensis HOM05D000278 ORTHO05D004794 5.6e-09 63.9 50 70.0
TWI75G0864 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 5.6e-09 63.9 50 70.0
GSVIVG01002278001 Vitis vinifera HOM05D000278 ORTHO05D004794 5.6e-09 63.9 55 65.5
arahy.Tifrunner.gnm1.ann1.H62ZJF Arachis hypogaea HOM05D000278 ORTHO05D004794 7.3e-09 63.5 50 68.0
CSS0017916 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 7.3e-09 63.5 50 68.0
Eucgr.J00618 Eucalyptus grandis HOM05D000278 ORTHO05D004794 7.3e-09 63.5 50 70.0
LjContig00564g0022207 Lotus japonicus HOM05D000278 ORTHO05D004794 7.3e-09 63.5 55 63.6
Prupe.6G154400 Prunus persica HOM05D000278 ORTHO05D004794 7.3e-09 63.5 50 70.0
PGR119G0569 Punica granatum HOM05D000278 ORTHO05D004794 7.3e-09 63.5 50 70.0
Sp3g10060 Schrenkiella parvula HOM05D000278 ORTHO05D004794 7.3e-09 63.5 81 55.6
TPR.G11653 Trifolium pratense HOM05D000278 ORTHO05D004794 7.3e-09 63.5 50 68.0
MSTRG.11745 Avicennia marina HOM05D000278 ORTHO05D004794 9.5e-09 63.2 50 68.0
CARHR086380 Cardamine hirsuta HOM05D000278 ORTHO05D004794 9.5e-09 63.2 82 54.9
FAN16G1090 Fragaria x ananassa HOM05D000278 ORTHO05D004794 9.5e-09 63.2 50 68.0
FAN16G3564 Fragaria x ananassa HOM05D000278 ORTHO05D004794 9.5e-09 63.2 50 68.0
FAN25G3467 Fragaria x ananassa HOM05D000278 ORTHO05D004794 9.5e-09 63.2 50 68.0
Gohir.A12G001300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 9.5e-09 63.2 50 68.0
Gorai.008G000400 Gossypium raimondii HOM05D000278 ORTHO05D004794 9.5e-09 63.2 50 68.0
RcHm_v2.0_Chr2g0128841 Rosa chinensis HOM05D000278 ORTHO05D004794 9.5e-09 63.2 50 68.0
RcHm_v2.0_Chr5g0049871 Rosa chinensis HOM05D000278 ORTHO05D004794 9.5e-09 63.2 50 68.0
SalBow8G4259 Salvia bowleyana HOM05D000278 ORTHO05D004794 9.5e-09 63.2 82 53.7
SalBow8G4293 Salvia bowleyana HOM05D000278 ORTHO05D004794 9.5e-09 63.2 82 53.7
unitig_749.g13821 Utricularia gibba HOM05D000278 ORTHO05D004794 9.5e-09 63.2 82 53.7
Cc00_g07390 Coffea canephora HOM05D000218 ORTHO05D004794 1.2e-08 62.8 50 68.0
Cc11_g01300 Coffea canephora HOM05D000278 ORTHO05D004794 1.2e-08 62.8 50 68.0
Haze_23638 Corylus avellana HOM05D000278 ORTHO05D004794 1.2e-08 62.8 50 68.0
Duzib147G1120 Durio zibethinus HOM05D000278 ORTHO05D004794 1.2e-08 62.8 50 68.0
Duzib187G1092 Durio zibethinus HOM05D000278 ORTHO05D004794 1.2e-08 62.8 50 68.0
HanXRQChr12g0378161 Helianthus annuus HOM05D000278 ORTHO05D004794 1.2e-08 62.8 82 53.7
Lalb_Chr04g0249751 Lupinus albus HOM05D000278 ORTHO05D004794 1.2e-08 62.8 82 53.7
Potri.009G157400 Populus trichocarpa HOM05D000278 ORTHO05D004794 1.2e-08 62.8 50 68.0
CANSAT35G1978 Cannabis sativa HOM05D000278 ORTHO05D004794 1.6e-08 62.4 49 69.4
ECA238G3358 Erigeron canadensis HOM05D000278 ORTHO05D004794 1.6e-08 62.4 81 54.3
Nn6g31931 Nelumbo nucifera HOM05D000278 ORTHO05D004794 1.6e-08 62.4 37 81.1
Zm00001eb207780 Zea mays HOM05D000278 ORTHO05D004794 1.6e-08 62.4 82 53.7
Aa31LG5G8530 Aethionema arabicum HOM05D000278 ORTHO05D004794 2.1e-08 62.0 82 54.9
BcaC05g29321 Brassica carinata HOM05D000278 ORTHO05D004794 2.1e-08 62.0 82 54.9
A05p37520 Brassica napus HOM05D000278 ORTHO05D004794 2.1e-08 62.0 82 54.9
C05p56080 Brassica napus HOM05D000278 ORTHO05D004794 2.1e-08 62.0 82 54.9
BolC5t34275H Brassica oleracea HOM05D000278 ORTHO05D004794 2.1e-08 62.0 82 54.9
BraA05t22550Z Brassica rapa HOM05D000278 ORTHO05D004794 2.1e-08 62.0 82 54.9
Migut.E01490 Erythranthe guttata HOM05D000278 ORTHO05D004794 2.1e-08 62.0 82 52.4
FvH4_3g27240 Fragaria vesca HOM05D000278 ORTHO05D004794 2.1e-08 62.0 37 81.1
FAN11G3227 Fragaria x ananassa HOM05D000278 ORTHO05D004794 2.1e-08 62.0 37 81.1
Glyma.02G273200 Glycine max HOM05D000278 ORTHO05D004794 2.1e-08 62.0 81 53.1
Glyma.14G043400 Glycine max HOM05D000278 ORTHO05D004794 2.1e-08 62.0 81 53.1
Gohir.D12G001100 Gossypium hirsutum HOM05D000278 ORTHO05D004794 2.1e-08 62.0 50 68.0
Hund02336 Selenicereus undatus HOM05D000278 ORTHO05D004794 2.1e-08 62.0 49 69.4
SGA_v2.0_scaffold4G02195 Striga asiatica HOM05D000278 ORTHO05D004794 2.1e-08 62.0 82 52.4
TWI31G0144 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 2.1e-08 62.0 50 66.0
C03p45300 Brassica napus HOM05D000278 ORTHO05D004794 2.8e-08 61.6 82 54.9
BolC3t16793H Brassica oleracea HOM05D000278 ORTHO05D004794 2.8e-08 61.6 82 54.9
Cc00_g07900 Coffea canephora HOM05D000218 ORTHO05D004794 2.8e-08 61.6 50 66.0
MELO3C015615.2 Cucumis melo HOM05D000278 ORTHO05D004794 2.8e-08 61.6 55 63.6
CsaV3_1G041990 Cucumis sativus L. HOM05D000278 ORTHO05D004794 2.8e-08 61.6 55 63.6
Migut.A00285 Erythranthe guttata HOM05D000278 ORTHO05D004794 2.8e-08 61.6 82 52.4
MBI08_g21308_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004794 2.8e-08 61.6 55 61.8
Medtr5g087560 Medicago truncatula HOM05D000278 ORTHO05D004794 2.8e-08 61.6 50 66.0
Potri.004G195100 Populus trichocarpa HOM05D000278 ORTHO05D004794 2.8e-08 61.6 55 61.8
SGA_v2.0_scaffold169G38626 Striga asiatica HOM05D000278 ORTHO05D004794 2.8e-08 61.6 82 52.4
THA.LOC104826479 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 2.8e-08 61.6 81 54.3
Thecc.01G126500 Theobroma cacao HOM05D000278 ORTHO05D004794 2.8e-08 61.6 82 53.7
TAR381G1107 Trochodendron aralioides HOM05D000278 ORTHO05D004794 2.8e-08 61.6 50 68.0
unitig_26.g9787 Utricularia gibba HOM05D000278 ORTHO05D004794 2.8e-08 61.6 83 51.8
CiPaw.14G092200 Carya illinoinensis HOM05D000278 ORTHO05D004794 3.6e-08 61.2 50 68.0
COL.COLO4_14011 Corchorus olitorius HOM05D000278 ORTHO05D004794 3.6e-08 61.2 82 52.4
DCAR_023796 Daucus carota HOM05D000278 ORTHO05D004794 3.6e-08 61.2 55 63.6
DCAR_027486 Daucus carota HOM05D000278 ORTHO05D004794 3.6e-08 61.2 55 63.6
HanXRQChr15g0468701 Helianthus annuus HOM05D000278 ORTHO05D004794 3.6e-08 61.2 55 63.6
Lalb_Chr10g0105841 Lupinus albus HOM05D000278 ORTHO05D004794 3.6e-08 61.2 82 52.4
Sabra04G0132500 Salix brachista HOM05D000278 ORTHO05D004794 3.6e-08 61.2 82 52.4
SMO347G0357 Selaginella moellendorffii HOM05D000278 ORTHO05D004794 3.6e-08 61.2 55 63.6
AUR62013959 Chenopodium quinoa HOM05D000278 ORTHO05D004794 4.7e-08 60.8 50 66.0
AUR62019654 Chenopodium quinoa HOM05D000278 ORTHO05D004794 4.7e-08 60.8 50 66.0
Cc00_g09680 Coffea canephora HOM05D000218 ORTHO05D000125 4.7e-08 60.8 53 56.6
Cc00_g19550 Coffea canephora HOM05D000218 ORTHO05D000125 4.7e-08 60.8 48 68.8
Nitab4.5_0003976g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004794 4.7e-08 60.8 50 66.0
Nitab4.5_0005873g0040 Nicotiana tabacum HOM05D000278 ORTHO05D004794 4.7e-08 60.8 50 66.0
Phvul.008G208800 Phaseolus vulgaris HOM05D000278 ORTHO05D004794 4.7e-08 60.8 82 51.2
Sed0019588 Sechium edule HOM05D000278 ORTHO05D004794 4.7e-08 60.8 55 61.8
VMungo0647G0629 Vigna mungo HOM05D000278 ORTHO05D004794 4.7e-08 60.8 82 51.2
Actinidia22468 Actinidia chinensis HOM05D000278 ORTHO05D004794 6.2e-08 60.5 82 51.2
Cpa.g.sc103.86 Carica papaya HOM05D000278 ORTHO05D004794 6.2e-08 60.5 49 67.3
Cc00_g15470 Coffea canephora HOM05D000218 ORTHO05D004794 6.2e-08 60.5 49 67.3
Dinv32114 Davidia involucrata HOM05D000278 ORTHO05D004794 6.2e-08 60.5 50 66.0
Peaxi162Scf00038g02039 Petunia axillaris HOM05D000278 ORTHO05D004794 6.2e-08 60.5 50 66.0
Peaxi162Scf00275g00008 Petunia axillaris HOM05D000278 ORTHO05D004794 6.2e-08 60.5 50 66.0
Solyc06g065520.3 Solanum lycopersicum HOM05D000278 ORTHO05D004794 6.2e-08 60.5 82 51.2
Sopen06g024160 Solanum pennellii HOM05D000278 ORTHO05D004794 6.2e-08 60.5 82 51.2
PGSC0003DMG400026124 Solanum tuberosum HOM05D000278 ORTHO05D004794 6.2e-08 60.5 82 51.2
TAR625G0442 Trochodendron aralioides HOM05D000278 ORTHO05D004794 6.2e-08 60.5 81 53.1
HPP92_007029 Vanilla planifolia HOM05D000278 ORTHO05D004794 6.2e-08 60.5 50 66.0
CSS0003568 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 8.1e-08 60.1 35 82.9
Sabra09G0123000 Salix brachista HOM05D000278 ORTHO05D004794 8.1e-08 60.1 82 51.2
Sed0013756 Sechium edule HOM05D000278 ORTHO05D004794 8.1e-08 60.1 55 60.0
Lj2A907T33 Lonicera japonica HOM05D000278 ORTHO05D004794 1.1e-07 59.7 82 51.2
Pp3c15_8230 Physcomitrium patens HOM05D000278 ORTHO05D004794 1.1e-07 59.7 55 60.0
vmacro08485 Vaccinium macrocarpon HOM05D000278 ORTHO05D004794 1.1e-07 59.7 50 66.0
Actinidia06356 Actinidia chinensis HOM05D000278 ORTHO05D004794 1.4e-07 59.3 82 51.2
EL10Ac4g08419 Beta vulgaris HOM05D000278 ORTHO05D004794 1.4e-07 59.3 50 66.0
CBR_g42151 Chara braunii HOM05D000278 ORTHO05D004794 1.4e-07 59.3 36 80.6
SEGI_21483 Sequoiadendron giganteum HOM05D000278 ORTHO05D004794 1.4e-07 59.3 37 73.0
ClCG03G014240 Citrullus lanatus HOM05D000278 ORTHO05D004794 1.8e-07 58.9 82 51.2
Psat0s921g0240 Pisum sativum HOM05D000278 ORTHO05D004794 1.8e-07 58.9 50 64.0
Potri.004G195300 Populus trichocarpa HOM05D000278 ORTHO05D004794 1.8e-07 58.9 82 50.0
CDE02G3738 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 2.4e-07 58.5 49 67.3
CDE06G0515 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 2.4e-07 58.5 49 67.3
PSO541G3784 Papaver somniferum HOM05D000278 ORTHO05D004794 2.4e-07 58.5 83 50.6
PSO675G7679 Papaver somniferum HOM05D000278 ORTHO05D004794 2.4e-07 58.5 83 50.6
THA.LOC104816967 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 2.4e-07 58.5 82 51.2
Pp3c9_14010 Physcomitrium patens HOM05D000278 ORTHO05D004794 3.1e-07 58.2 81 50.6
Dinv32841 Davidia involucrata HOM05D000278 ORTHO05D004794 4.0e-07 57.8 82 50.0
Mapoly0156s0015 Marchantia polymorpha HOM05D000278 ORTHO05D004794 4.0e-07 57.8 55 58.2
AagrBONN_evm.TU.Sc2ySwM_117.2607 Anthoceros agrestis HOM05D000278 ORTHO05D004794 6.8e-07 57.0 55 58.2
Rhsim05G0064500 Rhododendron simsii HOM05D000278 ORTHO05D004794 6.8e-07 57.0 82 50.0
Cre01.g026550 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004794 1.5e-06 55.8 81 49.4
MCO06G165 Micromonas commoda HOM05D000278 ORTHO05D004794 1.5e-06 55.8 50 58.0
TAR628G0924 Trochodendron aralioides HOM05D000278 ORTHO05D004794 2.0e-06 55.5 50 66.0
PRCOL_00005497 Prasinoderma coloniale HOM05D000278 ORTHO05D004794 3.4e-06 54.7 81 49.4
Atru.chr3.2916 Acer truncatum HOM05D000278 ORTHO05D004794 5.8e-06 53.9 33 81.8
ATR0661G304 Amborella trichopoda HOM05D000278 ORTHO05D004794 9.9e-06 53.1 81 50.6


User provided reference genes

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