Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p39760 Brassica napus HOM05D003541 ORTHO05D004095 1.7e-117 426.0 212 100.0
A07p39770 Brassica napus HOM05D003541 ORTHO05D004095 1.8e-111 406.0 206 98.5
C06p48040 Brassica napus HOM05D003541 ORTHO05D004095 5.8e-110 401.0 206 97.6
BraA07t31524Z Brassica rapa HOM05D003541 ORTHO05D004095 7.5e-110 400.6 206 97.1
BolC6t39839H Brassica oleracea HOM05D003541 ORTHO05D004095 4.9e-109 397.9 206 96.1
Thhalv10018209m.g Eutrema salsugineum HOM05D003541 ORTHO05D004095 6.8e-95 350.9 208 87.0
Carub.0002s2069 Capsella rubella HOM05D003541 ORTHO05D004095 2.2e-93 345.9 209 86.6
BraA07t30599Z Brassica rapa HOM05D003541 ORTHO05D004095 6.4e-93 344.4 209 84.7
BcaB03g15736 Brassica carinata HOM05D003541 ORTHO05D004095 8.4e-93 344.0 208 83.7
A07p29580 Brassica napus HOM05D003541 ORTHO05D004095 2.4e-92 342.4 209 84.7
C06p33740 Brassica napus HOM05D003541 ORTHO05D004095 5.4e-92 341.3 210 84.3
BolC6t38489H Brassica oleracea HOM05D003541 ORTHO05D004095 2.7e-91 339.0 210 83.8
BcaC08g45614 Brassica carinata HOM05D003541 ORTHO05D004095 1.3e-88 330.1 207 83.1
Sp5g29120 Schrenkiella parvula HOM05D003541 ORTHO05D004095 1.2e-86 323.6 208 81.2
THA.LOC104812131 Tarenaya hassleriana HOM05D003541 ORTHO05D004095 4.2e-84 315.1 208 77.9
CARHR067030 Cardamine hirsuta HOM05D003541 ORTHO05D004095 9.3e-84 313.9 194 80.4
AT1G18460 Arabidopsis thaliana HOM05D003541 ORTHO05D004095 2.5e-81 305.8 207 76.3
AL1G30890 Arabidopsis lyrata HOM05D003541 ORTHO05D004095 7.3e-81 304.3 207 76.3
Aa31LG7G3130 Aethionema arabicum HOM05D003541 ORTHO05D004095 9.6e-81 303.9 209 77.5
Thhalv10006963m.g Eutrema salsugineum HOM05D003541 ORTHO05D004095 2.4e-79 299.3 207 75.8
Sp1g16400 Schrenkiella parvula HOM05D003541 ORTHO05D004095 1.2e-78 297.0 207 75.4
Carub.0001s1809 Capsella rubella HOM05D003541 ORTHO05D004095 1.5e-78 296.6 207 74.9
AT1G73920 Arabidopsis thaliana HOM05D003541 ORTHO05D004095 9.9e-78 293.9 208 75.0
C08p43390 Brassica napus HOM05D003541 ORTHO05D004095 4.3e-73 278.5 205 70.2
AL2G33750 Arabidopsis lyrata HOM05D003541 ORTHO05D004095 1.6e-72 276.6 208 72.6
BolC8t51888H Brassica oleracea HOM05D003541 ORTHO05D004095 3.7e-72 275.4 205 69.3
A09p59950 Brassica napus HOM05D003541 ORTHO05D004095 4.8e-72 275.0 206 71.8
BraA09t41366Z Brassica rapa HOM05D003541 ORTHO05D004095 6.9e-71 271.2 205 71.2
BcaC07g41329 Brassica carinata HOM05D003541 ORTHO05D004095 1.7e-69 266.5 204 69.1
CARHR019070 Cardamine hirsuta HOM05D003541 ORTHO05D004095 4.9e-69 265.0 209 70.3
C08p18630 Brassica napus HOM05D003541 ORTHO05D004095 4.6e-67 258.5 208 68.8
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 4.6e-67 258.5 208 68.8
BcaNung05446 Brassica carinata HOM05D003541 ORTHO05D004095 1.0e-66 257.3 208 68.8
A08p30400 Brassica napus HOM05D003541 ORTHO05D004095 1.1e-65 253.8 208 68.3
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 4.3e-65 251.9 210 67.1
Thecc.03G029700 Theobroma cacao HOM05D003541 ORTHO05D004095 1.1e-63 247.3 209 65.1
COL.COLO4_16239 Corchorus olitorius HOM05D003541 ORTHO05D004095 1.2e-62 243.8 210 64.8
Potri.012G060600 Populus trichocarpa HOM05D003541 ORTHO05D004095 1.2e-62 243.8 207 62.3
Prupe.5G218200 Prunus persica HOM05D003541 ORTHO05D004095 1.0e-58 230.7 213 59.6
Sabra12G0043600 Salix brachista HOM05D003541 ORTHO05D004095 1.0e-58 230.7 213 60.1
QL10p023576 Quercus lobata HOM05D003541 ORTHO05D004095 1.8e-58 229.9 208 61.1
GSVIVG01008249001 Vitis vinifera HOM05D003541 ORTHO05D004095 1.8e-58 229.9 208 61.1
Cpa.g.sc13.27 Carica papaya HOM05D003541 ORTHO05D004095 5.7e-57 224.9 208 61.5
Ciclev10019107m.g Citrus clementina HOM05D003541 ORTHO05D004095 7.4e-57 224.6 208 60.6
CSS0035183 Camellia sinensis var. sinensis HOM05D003541 ORTHO05D004095 9.7e-57 224.2 209 61.2
Sc04g0003690 Simmondsia chinensis HOM05D003541 ORTHO05D004095 1.3e-56 223.8 208 60.6
Ah.11g047040 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.6e-56 223.4 206 60.2
Atru.chr9.784 Acer truncatum HOM05D003541 ORTHO05D004095 2.2e-56 223.0 206 57.8
EL10Ac5g11259 Beta vulgaris HOM05D003541 ORTHO05D004095 8.2e-56 221.1 208 61.1
arahy.Tifrunner.gnm1.ann1.SXG9J3 Arachis hypogaea HOM05D003541 ORTHO05D004095 9.0e-55 217.6 210 60.5
Dinv07364 Davidia involucrata HOM05D003541 ORTHO05D004095 9.0e-55 217.6 213 59.6
Glyma.09G187400 Glycine max HOM05D003541 ORTHO05D004095 9.0e-55 217.6 209 59.8
Gohir.D11G006000 Gossypium hirsutum HOM05D003541 ORTHO05D004095 1.2e-54 217.2 212 58.0
TWI81G0124 Tripterygium wilfordii HOM05D003541 ORTHO05D004095 1.5e-54 216.9 209 57.9
Lj4g0015559 Lotus japonicus HOM05D003541 ORTHO05D004095 2.0e-54 216.5 209 59.3
Lalb_Chr22g0352971 Lupinus albus HOM05D003541 ORTHO05D004095 2.0e-54 216.5 207 60.4
Glyma.07G089400 Glycine max HOM05D003541 ORTHO05D004095 4.5e-54 215.3 213 58.2
Gorai.007G007200 Gossypium raimondii HOM05D003541 ORTHO05D004095 5.9e-54 214.9 212 57.5
Gohir.A11G006900 Gossypium hirsutum HOM05D003541 ORTHO05D004095 7.7e-54 214.5 212 57.5
arahy.Tifrunner.gnm1.ann1.5B91PZ Arachis hypogaea HOM05D003541 ORTHO05D004095 1.0e-53 214.2 210 59.0
FAN13G2824 Fragaria x ananassa HOM05D003541 ORTHO05D004095 1.3e-53 213.8 210 59.0
Phvul.004G160400 Phaseolus vulgaris HOM05D003541 ORTHO05D004095 1.3e-53 213.8 213 58.7
SGA_v2.0_scaffold19G08810 Striga asiatica HOM05D003541 ORTHO05D004095 1.3e-53 213.8 210 59.5
Actinidia35078 Actinidia chinensis HOM05D003541 ORTHO05D004095 1.7e-53 213.4 210 57.1
ClCG04G011250 Citrullus lanatus HOM05D003541 ORTHO05D004095 2.9e-53 212.6 212 59.0
FAN08G0854 Fragaria x ananassa HOM05D003541 ORTHO05D004095 2.9e-53 212.6 210 59.0
TPR.G21707 Trifolium pratense HOM05D003541 ORTHO05D004095 3.8e-53 212.2 210 56.7
CsaV3_1G006500 Cucumis sativus L. HOM05D003541 ORTHO05D004095 5.0e-53 211.8 209 57.9
Actinidia18941 Actinidia chinensis HOM05D003541 ORTHO05D004095 6.5e-53 211.5 210 56.2
Migut.I00385 Erythranthe guttata HOM05D003541 ORTHO05D004095 6.5e-53 211.5 211 59.2
Lj2g0005362 Lotus japonicus HOM05D003541 ORTHO05D004095 1.1e-52 210.7 209 58.9
Eucgr.K02663 Eucalyptus grandis HOM05D003541 ORTHO05D004095 1.4e-52 210.3 210 59.5
FAN18G0309 Fragaria x ananassa HOM05D003541 ORTHO05D004095 1.4e-52 210.3 210 57.6
FAN18G3376 Fragaria x ananassa HOM05D003541 ORTHO05D004095 1.4e-52 210.3 210 57.6
Sed0001727 Sechium edule HOM05D003541 ORTHO05D004095 7.2e-52 208.0 209 57.9
Hund02522 Selenicereus undatus HOM05D003541 ORTHO05D004095 7.2e-52 208.0 208 57.2
FAN04G2140 Fragaria x ananassa HOM05D003541 ORTHO05D004095 1.2e-51 207.2 208 57.7
VMungo0464G0349 Vigna mungo HOM05D003541 ORTHO05D004095 1.6e-51 206.8 213 56.8
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 3.6e-51 205.7 207 57.0
Dinv40426 Davidia involucrata HOM05D003541 ORTHO05D004095 3.6e-51 205.7 210 58.6
Hma1.2p1_0340F.1_g129780 Hydrangea macrophylla HOM05D003541 ORTHO05D004095 3.6e-51 205.7 210 59.0
RcHm_v2.0_Chr7g0184731 Rosa chinensis HOM05D003541 ORTHO05D004095 4.6e-51 205.3 213 56.8
PSO063G0435 Papaver somniferum HOM05D003541 ORTHO05D004095 6.1e-51 204.9 208 59.1
SGA_v2.0_scaffold25G10984 Striga asiatica HOM05D003541 ORTHO05D004095 6.1e-51 204.9 207 56.0
Gohir.A11G006800 Gossypium hirsutum HOM05D003541 ORTHO05D004095 1.8e-50 203.4 210 56.7
Rhsim12G0144300 Rhododendron simsii HOM05D003541 ORTHO05D004095 1.8e-50 203.4 212 55.7
Oeu024322.1 Olea europaea HOM05D003541 ORTHO05D004095 2.3e-50 203.0 196 59.7
Gohir.D11G005900 Gossypium hirsutum HOM05D003541 ORTHO05D004095 5.1e-50 201.8 210 56.2
MD06G1212200 Malus domestica HOM05D003541 ORTHO05D004095 5.1e-50 201.8 211 53.1
Aqoxy3G03927 Aquilegia oxysepala HOM05D003541 ORTHO05D004095 6.7e-50 201.4 208 56.2
HanXRQChr09g0269901 Helianthus annuus HOM05D003541 ORTHO05D004095 6.7e-50 201.4 213 54.0
Lsat_1_v5_gn_5_25181 Lactuca sativa HOM05D003541 ORTHO05D004095 6.7e-50 201.4 212 54.7
Medtr8g103850 Medicago truncatula HOM05D003541 ORTHO05D004095 6.7e-50 201.4 215 53.5
PSO782G5001 Papaver somniferum HOM05D003541 ORTHO05D004095 6.7e-50 201.4 208 58.2
CAN.G438.122 Capsicum annuum HOM05D003541 ORTHO05D004095 8.8e-50 201.1 213 54.9
Gorai.007G007100 Gossypium raimondii HOM05D003541 ORTHO05D004095 8.8e-50 201.1 210 56.2
CANSAT80G0782 Cannabis sativa HOM05D003541 ORTHO05D004095 1.5e-49 200.3 203 55.2
PGSC0003DMG400005709 Solanum tuberosum HOM05D003541 ORTHO05D004095 1.5e-49 200.3 212 54.7
MBI09_g04371_MAGBIO Magnolia biondii HOM05D003541 ORTHO05D004095 2.5e-49 199.5 207 58.0
PGR083G2725 Punica granatum HOM05D003541 ORTHO05D004095 2.5e-49 199.5 212 57.5
Sed0000678 Sechium edule HOM05D003541 ORTHO05D004095 2.5e-49 199.5 209 56.5
Medtr6g085070 Medicago truncatula HOM05D003541 ORTHO05D004095 3.3e-49 199.1 210 56.7
Peaxi162Scf00015g00839 Petunia axillaris HOM05D003541 ORTHO05D004095 3.3e-49 199.1 198 57.1
MSTRG.11321 Avicennia marina HOM05D003541 ORTHO05D004095 4.3e-49 198.7 211 56.4
Solyc03g119720.4 Solanum lycopersicum HOM05D003541 ORTHO05D004095 4.3e-49 198.7 212 54.2
Lalb_Chr14g0371311 Lupinus albus HOM05D003541 ORTHO05D004095 9.7e-49 197.6 203 56.2
Psat1g039360 Pisum sativum HOM05D003541 ORTHO05D004095 1.3e-48 197.2 214 55.6
Aa31LG4G4210 Aethionema arabicum HOM05D003541 ORTHO05D004095 1.7e-48 196.8 139 73.4
Psat7g012440 Pisum sativum HOM05D003541 ORTHO05D004095 1.7e-48 196.8 217 53.0
Ca_17344_v3 Cicer arietinum L. HOM05D003541 ORTHO05D004095 2.8e-48 196.1 230 52.6
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.8e-48 196.1 196 57.1
TWI15G0244 Tripterygium wilfordii HOM05D003541 ORTHO05D004095 3.7e-48 195.7 194 58.2
AUR62032198 Chenopodium quinoa HOM05D003541 ORTHO05D004095 1.1e-47 194.1 206 55.3
Lsat_1_v5_gn_4_115841 Lactuca sativa HOM05D003541 ORTHO05D004095 1.8e-47 193.4 215 51.6
PGSC0003DMG400004445 Solanum tuberosum HOM05D003541 ORTHO05D004095 1.8e-47 193.4 209 54.1
Nn3g17767 Nelumbo nucifera HOM05D003541 ORTHO05D004095 2.4e-47 193.0 207 55.1
HPP92_024716 Vanilla planifolia HOM05D003541 ORTHO05D004095 2.4e-47 193.0 212 56.1
AUR62036965 Chenopodium quinoa HOM05D003541 ORTHO05D004095 3.1e-47 192.6 206 54.4
Hund10017 Selenicereus undatus HOM05D003541 ORTHO05D004095 4.1e-47 192.2 227 52.0
Manes.01G020100 Manihot esculenta HOM05D003541 ORTHO05D004095 5.3e-47 191.8 208 55.8
Cc04_g07430 Coffea canephora HOM05D003541 ORTHO05D004095 6.9e-47 191.4 211 55.0
CiPaw.16G084500 Carya illinoinensis HOM05D003541 ORTHO05D004095 1.2e-46 190.7 207 55.1
Sopen12g017870 Solanum pennellii HOM05D003541 ORTHO05D004095 2.6e-46 189.5 207 52.7
ECA246G2878 Erigeron canadensis HOM05D003541 ORTHO05D004095 3.4e-46 189.1 211 53.1
Eucgr.B00703 Eucalyptus grandis HOM05D003541 ORTHO05D004095 4.5e-46 188.7 207 53.1
MD14G1222700 Malus domestica HOM05D003541 ORTHO05D004095 7.7e-46 188.0 214 51.9
Solyc12g038160.2 Solanum lycopersicum HOM05D003541 ORTHO05D004095 7.7e-46 188.0 207 52.7
TAR371G0923 Trochodendron aralioides HOM05D003541 ORTHO05D004095 7.7e-46 188.0 210 55.2
arahy.Tifrunner.gnm1.ann1.Q237M7 Arachis hypogaea HOM05D003541 ORTHO05D004095 2.2e-45 186.4 207 50.7
HanXRQChr05g0152881 Helianthus annuus HOM05D003541 ORTHO05D004095 2.2e-45 186.4 214 51.4
Hma1.2p1_3191F.1_g333810 Hydrangea macrophylla HOM05D003541 ORTHO05D004095 1.2e-43 180.6 196 55.1
DCAR_011345 Daucus carota HOM05D003541 ORTHO05D004095 2.7e-43 179.5 209 50.7
VMungo0251G0053 Vigna mungo HOM05D003541 ORTHO05D004095 4.7e-43 178.7 218 50.9
Zm00001eb132660 Zea mays HOM05D003541 ORTHO05D004095 4.7e-43 178.7 213 52.6
CDE04G1171 Ceratophyllum demersum HOM05D003541 ORTHO05D004095 3.0e-42 176.0 209 49.3
unitig_699.g19434 Utricularia gibba HOM05D003541 ORTHO05D004095 5.1e-42 175.3 208 52.9
Nitab4.5_0001599g0130 Nicotiana tabacum HOM05D003541 ORTHO05D004095 2.0e-41 173.3 188 53.2
Phvul.002G315000 Phaseolus vulgaris HOM05D003541 ORTHO05D004095 3.3e-41 172.6 210 50.0
DCAR_023188 Daucus carota HOM05D003541 ORTHO05D004095 9.7e-41 171.0 213 50.7
DCAR_023189 Daucus carota HOM05D003541 ORTHO05D004095 9.7e-41 171.0 213 50.7
Glyma.08G040100 Glycine max HOM05D003541 ORTHO05D004095 2.2e-40 169.9 210 49.0
PGR044G0196 Punica granatum HOM05D003541 ORTHO05D004095 2.8e-40 169.5 211 49.8
HanXRQChr16g0501751 Helianthus annuus HOM05D003541 ORTHO05D004095 1.6e-38 163.7 217 47.9
ATR0681G201 Amborella trichopoda HOM05D003541 ORTHO05D004095 1.7e-37 160.2 196 51.5
Nitab4.5_0000410g0010 Nicotiana tabacum HOM05D003541 ORTHO05D004095 2.9e-37 159.5 188 51.1
Peaxi162Scf00804g00007 Petunia axillaris HOM05D003541 ORTHO05D004095 2.5e-36 156.4 198 50.5
Nitab4.5_0002043g0080 Nicotiana tabacum HOM05D003541 ORTHO05D004095 4.2e-36 155.6 142 57.7
vmacro16455 Vaccinium macrocarpon HOM05D003541 ORTHO05D004095 2.7e-35 152.9 247 44.5
vmacro22487 Vaccinium macrocarpon HOM05D003541 ORTHO05D004095 2.7e-35 152.9 247 44.5
TPR.G31445 Trifolium pratense HOM05D003541 ORTHO05D004095 2.3e-34 149.8 98 75.5
SEGI_10894 Sequoiadendron giganteum HOM05D003541 ORTHO05D004095 8.8e-34 147.9 218 45.4
AagrBONN_evm.TU.Sc2ySwM_362.2698 Anthoceros agrestis HOM05D003541 ORTHO05D004095 3.1e-31 139.4 209 46.4
SHI30433 Sapria himalayana HOM05D003541 ORTHO05D004095 1.1e-28 131.0 192 45.8
Pp3c8_18170 Physcomitrium patens HOM05D003541 ORTHO05D004095 1.6e-27 127.1 217 42.4
TPR.G31443 Trifolium pratense HOM05D003541 ORTHO05D004095 5.7e-25 118.6 150 52.7
Nitab4.5_0000208g0180 Nicotiana tabacum HOM05D003541 ORTHO05D004095 1.3e-24 117.5 99 60.6
Pp3c20_9110 Physcomitrium patens HOM05D003541 ORTHO05D004095 1.3e-24 117.5 223 39.0
MBI16_g06256_MAGBIO Magnolia biondii HOM05D003541 ORTHO05D004095 1.7e-24 117.1 217 39.2
SMO164G0035 Selaginella moellendorffii HOM05D003541 ORTHO05D004095 1.7e-24 117.1 194 39.7
Duzib068G0226 Durio zibethinus HOM05D003541 ORTHO05D004095 2.2e-24 116.7 140 53.6
Mapoly0004s0087 Marchantia polymorpha HOM05D003541 ORTHO05D004095 3.1e-23 112.8 218 37.6
Pp3c19_13160 Physcomitrium patens HOM05D003541 ORTHO05D004095 5.9e-22 108.6 204 38.7
ECA232G0305 Erigeron canadensis HOM05D003541 ORTHO05D004095 2.2e-21 106.7 62 75.8
Pp3c18_6270 Physcomitrium patens HOM05D003541 ORTHO05D004095 5.0e-21 105.5 222 33.3
Haze_18628 Corylus avellana HOM05D003541 ORTHO05D004095 5.5e-20 102.1 190 39.5
MELO3C002077.2 Cucumis melo HOM05D003541 ORTHO05D004095 5.5e-20 102.1 140 49.3
DCAR_011547 Daucus carota HOM05D003541 ORTHO05D004095 1.8e-18 97.1 160 43.1
Lj5C146G11 Lonicera japonica HOM05D003541 ORTHO05D004095 4.9e-16 89.0 141 47.5
SalBow5G5009 Salvia bowleyana HOM05D003541 ORTHO05D004095 8.3e-16 88.2 143 44.8
Lalb_Chr05g0222641 Lupinus albus HOM05D003541 ORTHO05D004095 5.4e-15 85.5 139 42.4
Sopen03g038560 Solanum pennellii HOM05D003541 ORTHO05D004095 4.5e-14 82.4 143 41.3
CBR_g165 Chara braunii HOM05D003541 ORTHO05D004095 4.3e-12 75.9 226 32.3
Manes.05G138900 Manihot esculenta HOM05D003541 ORTHO05D004095 6.1e-11 72.0 59 67.8
Glyma.05G232700 Glycine max HOM05D003541 ORTHO05D004095 1.7e-08 63.9 137 35.0


User provided reference genes

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