Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 7.3e-298 1026.5 550 100.0
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 3.3e-282 974.5 524 97.1
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 9.5e-282 973.0 551 94.6
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 8.1e-281 969.9 549 94.5
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 3.8e-278 961.1 548 94.3
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 7.6e-247 857.1 572 83.0
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.7e-246 855.9 560 84.5
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.4e-245 852.8 564 83.3
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.7e-236 822.0 572 81.3
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.8e-235 819.3 573 80.3
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.9e-234 815.8 582 79.7
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.4e-232 809.7 573 79.2
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 4.4e-218 761.5 552 77.0
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 9.1e-216 753.8 579 72.2
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.7e-193 679.9 586 65.5
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 3.6e-180 635.6 574 63.1
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 3.1e-179 632.5 567 63.1
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 5.8e-178 628.2 546 65.2
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.3e-177 627.1 544 63.6
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 3.2e-176 622.5 538 64.3
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 5.4e-176 621.7 567 63.0
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 7.0e-176 621.3 546 64.3
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 3.5e-175 619.0 567 62.8
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 1.7e-174 616.7 538 63.9
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.3e-174 616.3 565 62.5
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 2.3e-174 616.3 544 64.2
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 3.0e-174 615.9 558 63.6
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 3.9e-174 615.5 561 62.7
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 5.0e-174 615.1 559 63.3
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.1e-173 614.0 558 63.4
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 5.6e-173 611.7 561 63.3
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 1.2e-172 610.5 570 60.5
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.1e-172 609.8 565 62.1
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 2.1e-172 609.8 576 61.5
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 2.8e-172 609.4 594 60.9
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 6.2e-172 608.2 545 63.1
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 1.5e-170 603.6 554 61.4
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 4.4e-170 602.1 556 61.9
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.3e-169 600.5 564 60.3
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.3e-169 600.5 545 62.8
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.7e-169 600.1 540 62.8
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 4.9e-169 598.6 539 63.1
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 4.1e-168 595.5 547 61.6
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 5.4e-168 595.1 594 59.6
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 7.1e-168 594.7 560 59.8
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 7.1e-168 594.7 550 62.2
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.2e-167 594.0 546 61.9
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.1e-167 593.2 559 59.6
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 6.0e-167 591.7 591 59.4
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 7.8e-167 591.3 556 61.2
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 3.9e-166 589.0 577 58.2
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 8.6e-166 587.8 554 62.3
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.1e-165 587.4 552 60.5
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.9e-165 586.6 551 59.7
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.9e-165 586.6 604 57.5
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.5e-165 586.3 584 57.2
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.3e-165 585.9 557 60.0
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 5.6e-165 585.1 546 60.1
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 9.5e-165 584.3 543 60.8
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 9.5e-165 584.3 549 60.5
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.6e-164 583.6 549 60.5
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 3.6e-164 582.4 582 57.6
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 3.6e-164 582.4 543 60.0
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 4.7e-164 582.0 512 62.9
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 1.1e-163 580.9 547 59.6
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.4e-163 579.7 566 61.3
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.4e-163 579.7 566 61.3
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 5.2e-163 578.6 578 58.5
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 8.9e-163 577.8 596 56.4
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.0e-162 576.6 549 61.2
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 3.4e-162 575.9 550 59.5
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 1.3e-161 573.9 556 60.4
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.7e-161 573.5 549 61.0
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.2e-161 573.2 549 61.0
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 4.9e-161 572.0 548 58.6
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 6.4e-161 571.6 592 56.9
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.1e-160 570.9 557 57.5
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 9.2e-160 567.8 587 55.5
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.2e-159 567.4 545 59.8
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 5.1e-158 562.0 555 58.2
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 8.7e-158 561.2 592 56.1
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 4.3e-157 558.9 547 60.1
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.3e-157 558.1 545 59.1
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.5e-154 550.4 534 58.4
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 2.0e-154 550.1 532 58.1
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.4e-154 549.3 540 56.9
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 8.4e-153 544.7 545 57.2
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.4e-152 543.1 492 60.8
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.2e-151 540.8 513 61.8
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 3.5e-151 539.3 547 56.3
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 7.8e-151 538.1 551 57.0
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 1.3e-150 537.3 567 54.0
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.7e-145 520.4 560 54.1
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.4e-144 517.3 552 53.4
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 9.6e-141 504.6 555 52.6
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.8e-139 500.4 717 46.9
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 4.0e-139 499.2 571 53.4
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.2e-136 489.2 489 58.1
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 8.2e-132 474.9 574 51.2
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 2.6e-130 469.9 554 50.5
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.6e-124 450.7 475 56.4
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.4e-122 443.0 333 70.0
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.0e-117 427.2 346 64.7
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.7e-116 424.1 561 49.7
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 8.2e-116 421.8 424 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 7.2e-112 408.7 598 41.8
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 3.1e-107 393.3 459 49.0
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 3.5e-106 389.8 575 44.7
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 2.6e-101 373.6 550 45.5
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.7e-90 337.0 236 74.6
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 2.3e-86 323.9 534 39.0
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.8e-84 317.0 361 52.1
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 9.5e-80 302.0 552 38.9
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 3.4e-77 293.5 540 37.6
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.7e-68 264.6 543 36.8
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.9e-68 263.1 306 50.3
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 4.0e-62 243.4 447 36.7
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.3e-57 228.4 293 49.1
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 7.3e-48 196.1 158 64.6
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.8e-47 194.1 181 59.7
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 4.0e-46 190.3 393 34.4
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 9.9e-45 185.7 164 61.0
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.2e-43 180.6 385 37.4
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.4e-38 165.2 226 45.1
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 2.1e-34 151.4 92 82.6
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 3.0e-25 120.9 130 52.3
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 3.0e-17 94.4 54 90.7
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.9e-16 91.7 126 45.2
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 7.4e-16 89.7 126 46.0
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.5e-13 80.5 85 49.4


User provided reference genes

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