Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 7.0e-75 283.9 145 100.0
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.1e-72 276.6 145 97.2
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 5.4e-59 231.1 145 85.5
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.6e-58 229.6 145 84.8
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-40 170.2 82 97.6
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 3.4e-37 158.7 91 85.7
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 3.4e-37 158.7 91 85.7
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.6e-34 149.8 98 75.5
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-34 149.1 113 70.8
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.7e-34 149.1 93 78.5
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 4.6e-34 148.3 113 69.9
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 7.9e-34 147.5 76 90.8
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.3e-33 146.7 91 79.1
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.8e-33 146.4 97 75.3
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 5.1e-33 144.8 80 82.5
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 8.7e-33 144.1 76 86.8
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.5e-32 142.5 82 79.3
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.3e-32 142.1 86 74.4
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 9.6e-32 140.6 85 78.8
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.3e-31 140.2 83 80.7
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 3.7e-31 138.7 75 82.7
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 8.1e-31 137.5 77 80.5
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.1e-30 137.1 91 67.0
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 1.4e-30 136.7 77 77.9
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.8e-30 136.3 77 77.9
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.8e-30 136.3 77 77.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.4e-30 136.0 84 75.0
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.4e-30 136.0 76 85.5
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 2.4e-30 136.0 82 73.2
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.4e-30 136.0 82 73.2
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 4.0e-30 135.2 77 76.6
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.3e-30 134.8 77 76.6
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 6.9e-30 134.4 80 77.5
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.2e-29 133.7 77 76.6
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.2e-29 133.7 80 75.0
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.2e-29 133.7 83 74.7
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.5e-29 133.3 80 76.2
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.0e-29 132.9 80 76.2
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 2.6e-29 132.5 82 72.0
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.4e-29 132.1 80 75.0
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 3.4e-29 132.1 73 79.5
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 5.8e-29 131.3 77 75.3
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 5.8e-29 131.3 86 68.6
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 7.6e-29 131.0 72 79.2
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.3e-28 130.2 75 82.7
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.3e-28 130.2 77 76.6
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.3e-28 130.2 80 75.0
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.7e-28 129.8 88 68.2
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.2e-28 129.4 65 93.8
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 3.8e-28 128.6 77 74.0
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.8e-28 128.6 77 75.3
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 4.9e-28 128.3 63 95.2
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 4.9e-28 128.3 77 76.6
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 4.9e-28 128.3 75 76.0
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 6.4e-28 127.9 77 75.3
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 6.4e-28 127.9 98 62.2
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 6.4e-28 127.9 86 69.8
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.1e-27 127.1 63 93.7
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.1e-27 127.1 76 73.7
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.1e-27 127.1 75 72.0
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.4e-27 126.7 73 78.1
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 2.4e-27 125.9 74 75.7
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 3.2e-27 125.6 95 71.6
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 3.2e-27 125.6 101 60.4
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 4.2e-27 125.2 63 92.1
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 4.2e-27 125.2 96 67.7
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 4.2e-27 125.2 88 73.9
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 4.2e-27 125.2 73 76.7
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 5.5e-27 124.8 86 73.3
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 5.5e-27 124.8 88 71.6
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 5.5e-27 124.8 94 64.9
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 7.1e-27 124.4 89 69.7
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 7.1e-27 124.4 90 67.8
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 9.3e-27 124.0 72 77.8
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.2e-26 123.6 63 90.5
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.6e-26 123.2 88 67.0
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.6e-26 123.2 86 66.3
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 2.1e-26 122.9 90 67.8
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 2.7e-26 122.5 85 68.2
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 2.7e-26 122.5 93 62.4
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 2.7e-26 122.5 93 62.4
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 4.6e-26 121.7 83 67.5
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.6e-26 121.7 86 72.1
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 7.9e-26 120.9 77 71.4
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.0e-25 120.6 77 71.4
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.3e-25 120.2 77 74.0
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.3e-25 120.2 64 87.5
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.8e-25 119.8 77 72.7
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 2.3e-25 119.4 80 71.2
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.3e-25 119.4 80 67.5
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.3e-25 119.4 80 67.5
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 3.9e-25 118.6 75 70.7
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 3.9e-25 118.6 79 70.9
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 5.1e-25 118.2 75 76.0
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 5.1e-25 118.2 90 65.6
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 8.7e-25 117.5 94 61.7
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.1e-24 117.1 86 67.4
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 1.1e-24 117.1 72 70.8
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.5e-24 116.7 76 71.1
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-24 116.7 80 61.2
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.9e-24 116.3 74 70.3
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.9e-24 116.3 65 80.0
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 2.5e-24 115.9 84 66.7
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 4.3e-24 115.2 73 65.8
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 4.3e-24 115.2 87 62.1
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 7.4e-24 114.4 83 60.2
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.3e-23 113.6 89 62.9
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 2.8e-23 112.5 76 71.1
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 2.8e-23 112.5 71 70.4
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 3.7e-23 112.1 65 76.9
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 6.2e-23 111.3 77 67.5
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 6.2e-23 111.3 83 61.4
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 6.2e-23 111.3 83 61.4
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 6.2e-23 111.3 80 60.0
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.8e-22 109.8 83 61.4
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 2.4e-22 109.4 86 61.6
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 2.4e-22 109.4 75 62.7
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.1e-22 109.0 74 71.6
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 3.1e-22 109.0 77 63.6
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 3.1e-22 109.0 74 63.5
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 6.9e-22 107.8 82 64.6
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 6.9e-22 107.8 82 64.6
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 6.9e-22 107.8 75 69.3
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 9.0e-22 107.5 83 60.2
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 9.0e-22 107.5 83 60.2
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.5e-21 106.7 67 73.1
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.5e-21 106.7 75 68.0
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.5e-21 105.1 75 66.7
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 5.8e-21 104.8 63 73.0
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.3e-20 103.6 61 73.8
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.3e-20 103.6 61 73.8
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 2.2e-20 102.8 76 64.5
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.9e-20 101.7 76 61.8
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 6.0e-18 94.7 78 55.1
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 6.0e-18 94.7 95 53.7
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-17 93.6 113 49.6
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.3e-17 93.6 88 52.3
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.3e-17 92.8 93 52.7
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.7e-17 91.3 80 53.8
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 2.5e-16 89.4 65 64.6
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 2.5e-16 89.4 73 56.2
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.3e-16 89.0 55 72.7
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 4.3e-16 88.6 72 56.9
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.3e-16 88.6 65 63.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 9.7e-16 87.4 68 58.8
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.3e-15 87.0 56 69.6
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.6e-15 86.7 66 62.1
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.8e-15 85.9 61 63.9
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.8e-15 85.9 75 57.3
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.8e-15 85.1 56 67.9
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 5.9e-13 78.2 44 77.3
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.2e-12 76.3 50 68.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.2e-12 76.3 63 50.8
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.0e-09 67.4 63 50.8
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.3e-07 60.5 32 78.1
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 1.4e-06 57.0 46 60.9


User provided reference genes

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