Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 0.0e+00 1125.5 562 100.0
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 0.0e+00 1112.4 563 99.1
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 0.0e+00 1080.5 564 96.6
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 0.0e+00 1077.0 564 96.3
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.4e-307 1058.9 576 93.4
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 6.9e-304 1046.6 563 94.3
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.1e-280 969.5 607 84.2
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 2.8e-268 928.3 605 81.5
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 5.6e-261 904.0 589 81.5
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 5.6e-261 904.0 589 81.5
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 5.6e-261 904.0 589 81.5
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 3.2e-256 888.3 584 80.8
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 3.2e-256 888.3 584 80.8
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 3.4e-250 868.2 591 79.5
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 4.4e-250 867.8 592 78.0
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 3.7e-249 864.8 607 76.9
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 6.4e-249 864.0 573 80.5
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 3.4e-242 841.6 600 75.7
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 9.9e-226 786.9 609 70.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.1e-216 756.9 595 67.2
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.0e-209 733.8 614 64.0
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.3e-206 723.4 525 73.0
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 3.0e-206 722.2 527 70.4
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 8.7e-198 694.1 496 71.8
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 3.3e-197 692.2 572 65.0
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.7e-196 688.7 578 64.0
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 4.8e-196 688.3 551 65.9
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 6.3e-196 688.0 575 63.7
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 4.1e-195 685.3 498 72.1
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 6.9e-195 684.5 500 70.2
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.2e-194 683.7 484 72.1
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.5e-194 683.3 540 66.3
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.0e-194 682.9 555 65.6
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 2.6e-194 682.6 593 62.7
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.3e-193 680.2 533 67.5
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 1.7e-193 679.9 558 65.6
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.7e-193 679.9 550 64.2
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 7.2e-192 674.5 490 70.2
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.7e-191 672.5 540 66.1
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 2.7e-191 672.5 554 63.7
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 1.0e-190 670.6 499 70.5
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.4e-190 670.2 569 62.4
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 2.3e-190 669.5 531 67.6
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 3.0e-190 669.1 530 65.5
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 3.0e-190 669.1 513 68.6
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 5.1e-190 668.3 504 70.2
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 6.7e-190 667.9 557 64.5
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 5.7e-189 664.8 538 65.8
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.4e-187 659.4 530 66.4
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 3.1e-187 659.1 502 68.9
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 6.9e-187 657.9 447 74.5
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 9.1e-187 657.5 542 64.8
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 3.4e-186 655.6 539 65.9
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 5.9e-186 654.8 549 64.1
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 5.9e-186 654.8 577 62.7
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 7.7e-186 654.4 518 67.6
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 2.9e-185 652.5 594 60.8
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 2.9e-185 652.5 546 64.1
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 3.8e-185 652.1 564 62.4
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 5.0e-185 651.7 417 76.5
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 1.1e-184 650.6 482 69.5
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.4e-184 650.2 597 60.8
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.4e-184 650.2 424 76.7
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 2.5e-184 649.4 591 59.9
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 9.4e-184 647.5 602 60.0
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 9.4e-184 647.5 439 73.6
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 9.4e-184 647.5 436 74.8
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.6e-183 646.7 524 65.8
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 1.6e-183 646.7 529 65.0
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 1.6e-183 646.7 585 59.7
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 1.6e-183 646.7 504 67.9
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 2.7e-183 646.0 414 77.3
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 3.9e-182 642.1 555 63.1
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.5e-181 640.2 506 67.0
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 1.5e-181 640.2 490 66.7
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.6e-181 639.4 511 66.9
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 4.4e-181 638.6 561 62.0
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 4.4e-181 638.6 604 59.3
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 5.7e-181 638.3 506 66.8
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 9.7e-181 637.5 548 62.4
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 2.8e-180 636.0 426 73.7
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.7e-180 635.6 548 62.6
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 6.3e-180 634.8 478 68.4
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.4e-179 633.6 506 66.4
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 4.1e-179 632.1 603 59.2
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.1e-179 632.1 565 61.6
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 5.3e-179 631.7 499 66.7
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 5.3e-179 631.7 543 61.9
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.2e-178 630.6 508 63.8
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.5e-178 630.2 435 72.4
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.5e-178 630.2 476 68.5
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 2.0e-178 629.8 508 64.0
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.6e-178 629.4 414 74.6
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 3.5e-178 629.0 448 71.2
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 4.5e-178 628.6 545 61.8
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 4.5e-178 628.6 501 65.7
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.0e-177 627.5 408 75.7
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.0e-177 627.5 570 61.1
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 1.7e-177 626.7 497 67.0
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.7e-177 626.7 596 58.6
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 2.2e-177 626.3 554 61.6
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 3.8e-177 625.5 512 65.8
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 5.0e-177 625.2 406 76.6
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 5.0e-177 625.2 406 76.6
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 6.5e-177 624.8 552 63.0
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.1e-176 624.0 592 60.1
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 1.9e-176 623.2 438 73.5
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.2e-176 622.1 507 64.3
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 9.4e-176 620.9 407 75.9
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 9.4e-176 620.9 462 69.7
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.1e-175 619.8 572 60.3
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.1e-175 619.8 594 59.3
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.7e-175 619.4 502 65.9
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 6.1e-175 618.2 603 58.0
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 2.3e-174 616.3 503 64.8
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 5.2e-174 615.1 519 63.6
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.1e-173 614.0 458 68.3
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.0e-173 613.2 458 68.1
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 7.4e-173 611.3 474 67.3
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 7.4e-173 611.3 405 74.6
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 2.2e-172 609.8 408 74.3
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 4.8e-172 608.6 544 60.1
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 9.1e-171 604.4 467 66.4
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 2.6e-170 602.8 585 58.1
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 4.5e-170 602.1 581 57.5
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 2.2e-169 599.7 481 64.9
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 8.5e-169 597.8 465 66.0
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 5.5e-168 595.1 419 71.6
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 3.4e-165 585.9 414 70.3
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 3.7e-164 582.4 544 57.7
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 3.7e-164 582.4 369 78.0
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 5.4e-163 578.6 570 56.3
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.3e-158 563.1 362 76.5
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 3.8e-153 545.8 420 68.6
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.1e-152 544.3 437 63.8
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.6e-146 523.9 446 60.8
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.7e-146 523.1 584 53.6
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 9.5e-144 514.6 413 63.9
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.8e-142 510.4 421 62.7
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 8.9e-142 508.1 357 70.0
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 6.0e-130 468.8 362 65.2
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 3.6e-127 459.5 301 73.4
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 8.9e-126 454.9 373 63.5
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 4.0e-110 402.9 209 92.3
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 4.3e-104 382.9 197 92.9
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.1e-94 351.7 404 48.3
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 3.4e-93 346.7 180 91.7
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.5e-84 315.8 332 54.5
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.9e-73 280.0 159 80.5
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 6.7e-73 279.3 156 82.1
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 6.7e-73 279.3 156 82.1
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 8.8e-73 278.9 246 60.2
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 5.2e-65 253.1 180 72.2
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 2.0e-64 251.1 357 38.7
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.0e-64 251.1 199 64.3
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-55 221.5 147 78.2
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 7.0e-54 216.1 357 35.3
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 6.1e-50 203.0 109 90.8
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 4.0e-49 200.3 127 78.0
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.4e-48 196.8 207 56.0
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 9.8e-48 195.7 305 36.4
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 3.6e-42 177.2 127 73.2
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 1.1e-38 165.6 94 85.1
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.9e-36 157.5 110 69.1
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 5.0e-36 156.8 163 55.2
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.5e-35 155.2 83 86.7
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.8e-33 148.3 83 81.9
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.4e-32 144.1 208 38.5
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.4e-32 143.7 88 75.0
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 4.4e-24 117.1 101 61.4
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 9.2e-22 109.4 114 52.6
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 2.3e-12 78.2 182 31.9
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 1.5e-11 75.5 40 87.5
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 6.2e-10 70.1 111 40.5
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 5.2e-09 67.0 228 32.0
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 2.9e-07 61.2 57 56.1
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 4.9e-07 60.5 32 81.2


User provided reference genes

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