Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 3.3e-287 991.1 531 100.0
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 1.6e-281 972.2 531 98.1
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 3.9e-272 941.0 531 94.7
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 2.1e-262 908.7 531 92.7
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 7.9e-257 890.2 534 87.8
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 4.5e-252 874.4 534 85.0
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 2.5e-234 815.5 534 80.0
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 9.3e-234 813.5 534 80.1
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 3.5e-233 811.6 534 80.0
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 8.7e-232 807.0 534 80.1
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 2.2e-230 802.4 534 79.4
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 7.9e-217 757.3 534 75.5
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 4.0e-184 648.7 537 64.8
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.3e-174 617.1 534 60.9
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 1.7e-174 616.7 533 60.6
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 3.7e-174 615.5 534 60.7
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.4e-173 613.6 536 60.1
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 4.1e-173 612.1 533 60.4
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 7.8e-172 607.8 530 60.8
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 2.3e-171 606.3 524 60.3
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 2.3e-171 606.3 539 59.6
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.2e-169 600.5 537 58.7
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 2.3e-168 596.3 534 58.4
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 3.1e-168 595.9 539 59.0
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 1.2e-167 594.0 537 58.1
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.2e-167 594.0 537 58.7
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.5e-167 593.6 542 58.3
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.0e-167 593.2 537 58.1
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 3.4e-167 592.4 542 59.2
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 4.4e-167 592.0 542 57.0
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 4.4e-167 592.0 540 58.5
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 4.4e-167 592.0 537 57.7
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 4.4e-167 592.0 537 58.3
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 6.4e-166 588.2 540 56.9
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 6.4e-166 588.2 534 58.2
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 8.3e-166 587.8 530 58.7
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 1.4e-165 587.0 533 57.4
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 1.9e-165 586.6 537 57.5
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 1.9e-165 586.6 534 55.4
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 2.4e-165 586.3 525 59.2
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 3.2e-165 585.9 531 58.0
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 4.1e-165 585.5 523 58.5
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 9.2e-165 584.3 534 56.4
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 2.1e-164 583.2 539 55.7
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.1e-164 583.2 532 57.3
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 2.1e-164 583.2 533 57.0
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 4.6e-164 582.0 544 57.5
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 4.6e-164 582.0 534 58.4
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 1.7e-163 580.1 533 56.8
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 3.0e-163 579.3 529 58.4
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 3.0e-163 579.3 526 58.2
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 3.0e-163 579.3 534 54.9
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.9e-163 578.9 555 56.0
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.1e-162 577.4 533 56.8
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 1.5e-162 577.0 537 56.6
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 5.6e-162 575.1 539 57.5
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 7.3e-162 574.7 531 57.4
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.1e-161 573.2 560 54.8
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 3.6e-161 572.4 587 53.7
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 6.2e-161 571.6 539 59.6
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 5.8e-159 565.1 532 56.8
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.7e-158 563.5 532 56.0
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.9e-158 562.8 521 57.0
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 7.1e-157 558.1 536 55.4
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 2.7e-156 556.2 542 54.6
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 3.9e-155 552.4 577 52.5
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 3.9e-155 552.4 536 54.9
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 4.3e-154 548.9 534 54.7
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 1.6e-153 547.0 522 54.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 8.1e-153 544.7 522 55.0
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 5.2e-152 542.0 521 54.9
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 9.9e-151 537.7 535 55.3
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.7e-150 537.0 531 55.0
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 8.4e-150 534.6 532 52.3
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 3.5e-148 529.3 555 52.4
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 5.1e-147 525.4 535 51.4
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.1e-144 517.7 535 52.7
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-144 517.3 545 51.9
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 4.5e-143 512.3 498 55.4
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 7.6e-143 511.5 579 50.3
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 5.4e-141 505.4 547 51.0
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.6e-140 503.8 443 61.2
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 3.5e-140 502.7 451 57.9
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 8.7e-139 498.0 528 50.8
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.4e-135 486.1 528 50.0
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.7e-134 483.8 501 51.9
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.8e-129 466.5 536 48.9
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 5.1e-123 445.7 439 52.8
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 4.3e-122 442.6 536 47.2
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.8e-115 420.6 406 54.9
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 1.6e-113 414.1 573 44.7
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 4.8e-113 412.5 402 54.5
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.8e-110 402.9 392 55.4
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 3.2e-109 399.8 531 42.6
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.6e-108 397.5 549 43.0
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.0e-107 394.8 541 41.8
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.9e-93 347.4 500 42.2
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.6e-92 344.4 356 50.6
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 6.1e-92 342.4 356 50.3
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.0e-90 337.4 555 36.9
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.1e-85 321.6 284 59.2
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 5.2e-83 312.8 548 37.0
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.3e-81 308.1 289 57.4
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 4.7e-76 289.7 470 38.7
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 2.1e-68 264.2 284 52.5
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 5.6e-61 239.6 205 61.5
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 3.6e-60 236.9 573 31.9
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 4.0e-59 233.4 394 38.8
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 5.2e-59 233.0 558 30.5
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 4.6e-47 193.4 156 63.5
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.7e-46 191.4 161 61.5
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 4.0e-43 180.3 547 26.9
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 6.8e-43 179.5 108 88.0
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.8e-42 176.4 213 47.4
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 2.9e-41 174.1 169 49.7
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 9.6e-37 159.1 135 63.7
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.4e-34 150.6 131 58.0
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 7.6e-34 149.4 136 56.6
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 9.9e-34 149.1 120 57.5
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 3.2e-24 117.5 100 67.0
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 7.1e-24 116.3 365 31.2
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 7.1e-24 116.3 365 31.2
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 1.6e-23 115.2 71 84.5
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.3e-22 111.3 114 50.9
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 4.3e-21 107.1 86 61.6
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 9.6e-21 105.9 92 59.8
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.3e-20 105.5 491 27.3
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 1.2e-15 89.0 94 47.9
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 1.6e-15 88.6 88 60.2
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.3e-12 79.0 77 50.6
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 2.6e-10 71.2 114 41.2
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.7e-09 68.6 115 40.0
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 1.7e-09 68.6 48 60.4
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.4e-08 65.5 73 43.8


User provided reference genes

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