Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 1.7e-188 662.5 331 100.0
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 6.5e-185 650.6 331 98.8
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 5.0e-177 624.4 321 98.4
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 1.1e-176 623.2 331 95.5
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 1.6e-175 619.4 321 97.8
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 8.0e-175 617.1 320 96.6
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 1.1e-163 580.1 331 87.9
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 2.0e-162 575.9 331 87.3
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 2.9e-161 572.0 331 87.6
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 9.5e-160 567.0 331 86.4
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 6.8e-158 560.8 331 85.8
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 2.6e-157 558.9 331 84.9
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 1.9e-147 526.2 330 80.0
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 5.1e-129 464.9 326 72.1
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 8.1e-111 404.4 298 64.8
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 9.0e-110 401.0 322 61.2
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 2.0e-109 399.8 320 61.6
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 5.8e-109 398.3 308 64.6
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 1.0e-108 397.5 306 64.1
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 1.3e-108 397.1 313 61.7
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 1.7e-108 396.7 327 61.2
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 2.2e-108 396.4 331 61.3
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 2.2e-108 396.4 282 67.0
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 2.9e-108 396.0 325 60.3
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 4.9e-108 395.2 342 58.2
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 8.4e-108 394.4 321 61.1
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 8.4e-108 394.4 303 62.4
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 4.2e-107 392.1 331 59.8
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 1.2e-106 390.6 298 62.1
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 2.1e-106 389.8 327 60.2
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 2.1e-106 389.8 309 59.5
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 2.7e-106 389.4 323 58.8
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 3.5e-106 389.0 302 62.9
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 3.5e-106 389.0 297 62.0
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 7.9e-106 387.9 339 59.3
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 1.0e-105 387.5 328 57.3
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 1.8e-105 386.7 293 62.8
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 2.3e-105 386.3 333 60.1
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 1.3e-103 380.6 328 55.8
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 6.3e-103 378.3 321 56.4
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 2.4e-102 376.3 325 57.8
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 2.4e-102 376.3 322 57.8
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 5.3e-102 375.2 309 60.2
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 2.0e-101 373.2 292 61.3
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 2.6e-101 372.9 308 56.8
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 1.7e-100 370.2 326 56.1
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 8.4e-100 367.9 317 56.8
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 3.2e-99 365.9 325 56.3
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 3.2e-99 365.9 304 57.2
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 3.2e-99 365.9 285 61.4
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 5.5e-99 365.2 298 58.7
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 1.2e-98 364.0 298 58.4
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 4.6e-98 362.1 312 56.1
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 1.3e-97 360.5 298 58.7
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 8.7e-97 357.8 310 54.5
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 1.9e-96 356.7 320 55.3
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 1.3e-95 354.0 298 58.1
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 8.2e-95 351.3 316 54.1
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 1.4e-94 350.5 319 55.8
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 5.9e-93 345.1 292 54.5
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 7.7e-93 344.7 284 59.2
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 1.7e-92 343.6 269 61.0
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 2.9e-92 342.8 291 54.0
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.1e-91 340.9 270 60.7
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 1.1e-91 340.9 322 54.7
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.4e-89 334.0 381 47.8
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 5.1e-89 332.0 256 63.3
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.7e-87 327.0 293 57.3
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 2.2e-87 326.6 269 61.0
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 4.8e-87 325.5 290 52.4
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 2.0e-85 320.1 293 56.7
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 4.5e-85 318.9 309 48.9
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 3.2e-83 312.8 319 47.6
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 3.0e-81 306.2 312 52.9
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 6.7e-81 305.1 320 49.1
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 2.9e-76 289.7 327 48.6
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 7.5e-72 275.0 364 48.4
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 2.2e-71 273.5 327 41.6
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 1.2e-69 267.7 211 60.2
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 1.7e-68 263.8 203 62.1
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 3.8e-68 262.7 322 44.1
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 1.1e-67 261.2 211 59.7
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 2.7e-66 256.5 205 56.6
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 3.6e-66 256.1 270 52.2
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 4.4e-64 249.2 210 55.2
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 1.3e-63 247.7 209 56.5
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 9.1e-62 241.5 269 50.2
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 2.5e-59 233.4 241 50.2
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 1.4e-54 217.6 274 42.0
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 9.5e-51 204.9 184 57.1
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 2.2e-47 193.7 287 42.5
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 5.9e-45 185.7 122 67.2
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 5.0e-44 182.6 289 39.4
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 2.3e-41 173.7 211 42.7
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 4.0e-41 172.9 325 36.3
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 1.8e-33 147.5 99 67.7
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 3.1e-33 146.7 295 31.2
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 4.0e-33 146.4 126 51.6
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 2.2e-31 140.6 166 47.0
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 1.1e-30 138.3 110 61.8
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 3.9e-28 129.8 118 55.9
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 3.9e-28 129.8 122 52.5
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 2.5e-27 127.1 91 61.5
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 5.2e-25 119.4 80 62.5
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 7.6e-24 115.5 155 37.4
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.2e-23 114.0 89 64.0
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 2.9e-23 113.6 79 63.3
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 6.4e-23 112.5 89 62.9
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 9.2e-22 108.6 269 26.4
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 1.1e-19 101.7 178 37.6
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 6.9e-17 92.4 85 52.9
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 5.4e-14 82.8 59 62.7
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 6.2e-10 69.3 47 74.5
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 2.6e-08 63.9 142 33.1
Pp3c7_10090 Physcomitrium patens HOM05D006784 ORTHO05D008508 1.3e-07 61.6 205 28.8
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.4e-07 59.3 152 30.3
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.4e-07 58.9 152 30.3
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.4e-07 58.9 152 30.3
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 5.4e-06 56.2 39 66.7


User provided reference genes

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