Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 5.0e-156 554.7 283 100.0
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.4e-153 546.6 283 98.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 2.4e-150 535.8 284 97.2
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 4.1e-150 535.0 284 97.2
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 3.1e-142 508.8 285 92.6
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.6e-136 489.2 285 89.8
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.4e-126 456.1 281 87.2
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.0e-121 440.7 282 84.8
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.5e-120 436.8 282 84.0
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 5.4e-118 428.3 291 80.4
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.2e-117 427.2 282 83.0
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.6e-109 398.7 282 78.4
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.6e-96 356.3 301 69.1
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.1e-76 288.9 290 60.3
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.6e-74 283.9 290 59.3
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.8e-74 283.1 287 56.8
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.8e-74 283.1 285 55.8
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.8e-74 283.1 294 58.8
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.1e-73 281.2 285 55.8
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.1e-73 279.6 294 55.8
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.0e-72 276.9 292 57.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.6e-72 276.6 285 55.1
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 3.4e-72 276.2 292 55.5
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 3.4e-72 276.2 292 55.5
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.8e-72 275.4 285 54.4
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 7.6e-72 275.0 282 56.7
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.3e-71 274.2 285 54.4
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-71 274.2 285 54.4
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.7e-71 273.9 288 57.6
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 2.9e-71 273.1 288 56.9
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.9e-71 273.1 295 54.6
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 3.8e-71 272.7 297 54.5
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.9e-71 272.3 290 55.5
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.1e-70 271.2 283 56.2
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.9e-70 270.4 303 53.1
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.9e-70 270.4 284 56.0
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.4e-70 270.0 285 54.4
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 9.3e-70 268.1 298 55.0
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 9.3e-70 268.1 285 55.1
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 9.3e-70 268.1 284 53.5
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.6e-69 267.3 291 58.1
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.7e-69 266.5 289 54.7
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 3.5e-69 266.2 293 55.3
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.0e-68 264.6 285 54.7
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.3e-68 264.2 286 55.2
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.8e-68 263.8 286 54.5
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.3e-68 263.5 286 54.9
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 3.9e-68 262.7 288 55.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 6.7e-68 261.9 290 52.8
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 8.7e-68 261.5 283 54.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.6e-66 257.3 283 53.7
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.6e-66 257.3 286 53.1
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.8e-66 256.5 284 53.5
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 8.2e-66 255.0 286 52.4
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.1e-65 254.6 291 54.6
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.4e-65 253.4 291 56.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 3.1e-65 253.1 273 53.5
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.0e-64 250.4 302 53.0
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 2.2e-63 246.9 292 54.1
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 6.5e-63 245.4 291 54.0
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.4e-62 244.2 295 51.5
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.9e-62 243.8 295 51.2
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 4.2e-62 242.7 304 49.7
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 5.5e-62 242.3 286 51.0
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 7.1e-62 241.9 286 54.5
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.1e-61 240.4 295 50.2
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.7e-61 240.0 282 54.3
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 6.0e-61 238.8 294 53.7
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.0e-60 238.0 289 50.2
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.3e-60 237.7 272 54.8
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 3.0e-60 236.5 295 49.2
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 3.9e-60 236.1 294 52.0
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 8.7e-60 235.0 292 48.6
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-59 234.6 292 50.7
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 2.5e-59 233.4 297 49.5
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.3e-59 233.0 292 50.3
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 5.7e-59 232.3 286 50.3
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 5.7e-59 232.3 305 49.2
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 9.7e-59 231.5 327 49.5
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 9.7e-59 231.5 292 51.0
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 9.7e-59 231.5 287 50.5
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.6e-58 230.7 282 51.4
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 3.7e-58 229.6 294 49.3
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.7e-58 229.6 303 48.8
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 8.2e-58 228.4 239 56.9
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.4e-57 227.6 288 48.6
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.8e-57 227.3 334 46.1
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.8e-57 227.3 334 46.1
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.4e-57 226.9 288 49.7
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 3.1e-57 226.5 301 51.2
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 9.0e-57 224.9 302 48.7
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.0e-56 223.8 286 50.3
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.5e-56 222.6 297 49.2
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 5.9e-56 222.2 287 49.5
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 5.9e-56 222.2 313 46.3
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 3.8e-55 219.5 309 46.9
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 6.5e-55 218.8 287 46.7
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.4e-54 217.6 299 48.5
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.4e-54 217.6 288 50.3
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.9e-54 217.2 301 47.8
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.9e-54 217.2 297 48.1
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.9e-54 217.2 292 51.0
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.2e-53 214.5 299 49.5
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.2e-53 214.5 273 49.8
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.1e-53 213.8 301 49.5
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.6e-53 212.6 287 47.4
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.8e-52 210.7 274 49.3
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.8e-52 210.7 296 48.6
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.9e-52 209.5 214 54.2
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 6.7e-52 208.8 164 67.1
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.1e-51 208.0 208 57.2
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.9e-51 207.2 296 49.0
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.5e-51 206.8 214 53.7
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.3e-51 206.5 242 51.7
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 4.3e-51 206.1 251 51.8
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.4e-51 205.3 214 53.3
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 6.3e-50 202.2 294 46.9
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 6.3e-50 202.2 295 46.4
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 6.3e-50 202.2 286 47.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.1e-49 201.4 316 45.6
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.1e-49 199.9 166 64.5
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.4e-48 196.4 272 50.7
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.3e-47 194.5 290 45.2
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.1e-46 191.4 280 46.8
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 2.7e-45 186.8 298 45.0
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 3.6e-45 186.4 287 43.9
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.0e-44 184.9 268 47.4
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.4e-44 184.5 297 43.4
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 2.3e-44 183.7 343 41.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.5e-43 181.0 126 69.8
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 7.4e-43 178.7 290 44.1
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 9.7e-43 178.3 184 54.9
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.3e-42 177.9 287 41.8
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.7e-42 177.6 180 57.8
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.8e-42 176.0 165 58.8
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 7.7e-40 168.7 178 60.7
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 7.7e-40 168.7 290 41.0
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.2e-39 167.2 290 40.7
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 3.6e-37 159.8 280 41.1
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 8.0e-37 158.7 115 65.2
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 8.0e-37 158.7 115 65.2
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.0e-36 158.3 164 54.3
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.0e-36 158.3 289 41.5
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 8.8e-36 155.2 276 41.3
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.6e-35 153.7 129 60.5
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.1e-33 148.3 278 39.2
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 2.4e-33 147.1 289 38.4
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 4.1e-33 146.4 209 44.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.1e-29 134.0 154 48.7
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.1e-29 134.0 180 47.8
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 4.4e-27 126.3 125 53.6
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 2.9e-23 113.6 202 35.1
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.2e-22 109.8 77 66.2
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 2.8e-10 70.5 122 45.1
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.9e-07 60.5 55 50.9
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 4.3e-06 56.6 172 35.5
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.3e-06 55.8 48 47.9


User provided reference genes

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