Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.8e-154 548.9 345 100.0
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.1e-147 526.9 347 97.4
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.5e-147 526.6 345 97.1
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 8.1e-146 520.8 347 96.3
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.6e-130 469.9 346 88.2
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 5.9e-120 434.9 347 83.6
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 2.5e-118 429.5 345 82.0
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 9.4e-118 427.6 345 81.4
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.4e-116 423.7 332 84.6
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 6.5e-111 404.8 353 79.0
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 5.5e-110 401.7 349 77.9
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 3.3e-107 392.5 347 76.1
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.4e-97 360.5 208 93.3
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 3.6e-93 345.9 342 71.3
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.0e-92 342.8 357 67.2
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 5.2e-92 342.0 345 70.4
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-91 340.5 357 66.7
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 2.6e-91 339.7 345 69.0
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.3e-90 337.4 345 69.3
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.7e-90 337.0 346 68.8
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 2.8e-90 336.3 346 68.5
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.1e-89 334.3 343 67.9
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 3.1e-89 332.8 345 68.1
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.6e-88 330.5 349 67.0
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.6e-88 330.5 349 67.0
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 8.5e-87 324.7 346 68.2
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 8.5e-87 324.7 357 66.1
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 9.5e-86 321.2 348 66.4
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.6e-85 320.5 335 68.7
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.6e-85 320.5 350 65.4
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.8e-85 319.7 350 67.7
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.6e-85 319.3 354 66.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.1e-85 318.5 335 68.4
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.0e-84 317.8 346 66.5
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.4e-84 317.4 351 64.4
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 2.3e-84 316.6 347 66.3
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 5.2e-84 315.5 360 63.6
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 5.2e-84 315.5 344 66.9
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.8e-84 315.1 335 68.1
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.2e-83 314.3 342 65.5
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 2.0e-83 313.5 349 65.9
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 2.6e-83 313.2 356 64.3
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.5e-83 311.6 347 64.3
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 3.1e-81 306.2 353 57.5
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 4.1e-81 305.8 345 64.9
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.2e-80 304.3 343 64.7
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.6e-80 303.9 290 72.1
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.6e-80 303.9 350 64.6
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.0e-80 303.5 346 65.3
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 3.5e-80 302.8 345 63.2
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 5.9e-80 302.0 369 57.5
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 5.9e-80 302.0 351 61.8
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 5.9e-80 302.0 343 63.0
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 7.8e-80 301.6 343 65.6
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.7e-79 300.4 343 63.8
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.8e-79 299.3 360 61.7
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 3.8e-79 299.3 344 60.5
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 8.6e-79 298.1 344 64.0
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.9e-78 297.0 343 63.8
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.9e-78 297.0 283 73.5
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.3e-78 296.2 278 75.2
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 5.6e-78 295.4 370 60.0
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.6e-78 295.4 278 73.0
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 7.3e-78 295.0 351 62.1
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.2e-77 294.3 343 64.1
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.8e-77 293.1 349 60.7
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.8e-77 293.1 347 62.2
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.8e-77 293.1 345 60.9
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 3.0e-76 289.7 372 58.9
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.0e-76 289.7 357 63.3
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 4.0e-76 289.3 341 63.6
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 8.9e-76 288.1 344 56.4
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 2.6e-75 286.6 344 58.7
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 3.4e-75 286.2 340 64.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.4e-75 286.2 344 61.6
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.4e-75 286.2 331 63.1
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 3.4e-75 286.2 358 62.0
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 5.7e-75 285.4 357 61.6
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.7e-74 283.9 283 69.6
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.4e-73 280.8 398 43.0
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.4e-73 278.9 227 64.3
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 9.2e-73 278.1 345 60.3
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 2.0e-72 276.9 370 58.4
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.7e-71 273.9 349 59.6
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-70 270.8 248 56.5
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.9e-70 270.4 324 61.7
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 4.3e-70 269.2 343 59.8
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 5.6e-70 268.9 225 61.3
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.1e-69 266.9 282 66.3
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 3.6e-69 266.2 238 57.6
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.1e-68 264.6 301 67.4
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 3.4e-67 259.6 247 55.5
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 4.9e-66 255.8 313 63.3
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 9.2e-65 251.5 339 57.8
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 3.5e-64 249.6 345 53.9
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 4.6e-64 249.2 342 57.9
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 7.8e-64 248.4 343 57.4
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 5.0e-63 245.7 353 55.0
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.1e-62 244.6 285 54.7
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.9e-62 243.8 218 57.3
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.5e-62 243.4 358 57.3
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.8e-61 240.0 342 56.1
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.6e-61 239.6 250 71.6
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 8.1e-61 238.4 419 49.4
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.1e-61 238.4 342 55.8
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 4.0e-60 236.1 288 61.8
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.2e-58 230.3 369 38.2
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 6.4e-58 228.8 318 43.1
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.4e-57 225.7 342 54.4
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 3.9e-55 219.5 326 55.8
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.1e-52 209.9 342 52.9
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 5.4e-49 199.1 183 56.3
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 2.5e-46 190.3 280 57.5
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 4.7e-45 186.0 264 60.2
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 8.1e-45 185.3 181 55.2
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 5.4e-41 172.6 161 57.1
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 5.1e-39 166.0 213 42.7
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.5e-38 163.7 193 73.6
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.6e-37 161.0 134 56.7
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.4e-36 157.1 241 60.2
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 9.9e-35 151.8 193 69.9
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.3e-31 140.6 178 46.6
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 3.0e-31 140.2 278 50.0
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 8.7e-31 138.7 286 48.6
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-30 137.5 177 46.3
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.1e-29 134.0 177 45.8
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 3.3e-22 110.2 113 51.3
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 9.6e-22 108.6 173 68.8
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.6e-21 107.8 86 55.8
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-21 107.5 154 75.3
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 3.8e-18 96.7 84 57.1
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-17 94.7 92 48.9
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 9.3e-17 92.0 56 76.8
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-15 88.2 127 79.5
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 1.1e-14 85.1 63 63.5
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 2.2e-13 80.9 133 58.6
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.5e-11 73.2 121 80.2
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 5.5e-09 66.2 54 61.1
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-07 61.6 41 63.4


User provided reference genes

Program Settings