Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 4.8e-232 807.4 381 100.0
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 4.5e-230 800.8 381 99.0
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.3e-213 746.1 382 93.7
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.3e-213 746.1 382 93.7
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.1e-204 716.5 385 90.6
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 2.5e-196 688.7 381 84.3
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.8e-194 682.6 381 84.8
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 4.4e-193 677.9 380 84.2
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 5.9e-190 667.5 381 82.2
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.0e-189 666.8 381 81.9
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 8.6e-189 663.7 381 81.6
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 1.9e-183 646.0 401 75.6
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 3.3e-164 582.0 381 71.1
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 3.0e-149 532.3 381 65.1
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 6.9e-146 521.2 381 63.0
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.2e-145 520.4 385 63.6
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.5e-145 520.0 385 63.4
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 5.8e-145 518.1 382 63.1
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.4e-143 512.7 386 63.7
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 9.3e-143 510.8 381 62.7
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 9.3e-143 510.8 380 62.4
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.6e-142 510.0 382 63.1
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 2.7e-142 509.2 381 62.5
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 3.0e-141 505.8 381 62.2
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 2.5e-140 502.7 380 61.1
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 5.6e-140 501.5 409 58.4
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 3.7e-139 498.8 388 61.6
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.8e-139 498.4 388 60.3
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 6.2e-139 498.0 382 62.6
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 1.1e-138 497.3 381 59.8
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 2.4e-138 496.1 382 60.5
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.4e-138 496.1 381 61.4
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.1e-138 495.7 383 61.6
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 6.9e-138 494.6 385 60.5
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.2e-137 493.8 380 60.0
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.4e-137 492.3 388 60.3
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 7.6e-137 491.1 380 60.8
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.9e-136 489.2 381 59.3
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 6.4e-136 488.0 364 62.9
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.4e-135 486.9 388 60.1
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 1.4e-135 486.9 382 61.3
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 9.3e-135 484.2 403 58.8
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.6e-134 483.4 381 58.3
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 2.1e-134 483.0 408 55.1
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 2.7e-134 482.6 380 60.5
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 2.3e-133 479.6 350 64.0
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 3.9e-133 478.8 382 60.2
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 4.3e-132 475.3 381 60.4
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 2.8e-131 472.6 385 58.2
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 6.2e-131 471.5 396 57.6
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 8.2e-131 471.1 383 58.7
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.4e-130 470.3 381 58.8
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 6.9e-130 468.0 364 58.8
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 2.6e-129 466.1 381 57.5
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 2.6e-129 466.1 381 58.0
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.8e-129 464.9 380 57.6
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 7.6e-129 464.5 381 58.3
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.3e-128 463.8 381 57.7
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 2.9e-128 462.6 381 57.2
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 3.8e-128 462.2 383 57.2
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 6.5e-128 461.5 382 57.9
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 5.5e-127 458.4 382 57.6
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 3.5e-126 455.7 472 50.6
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 6.0e-126 454.9 384 57.6
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 7.9e-126 454.5 386 57.3
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 2.5e-124 449.5 381 56.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.3e-124 448.7 380 56.1
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 5.3e-122 441.8 381 55.1
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.2e-121 440.7 381 56.2
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 7.7e-121 438.0 393 56.0
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.3e-120 437.2 381 55.6
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.2e-120 436.4 383 54.6
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 3.8e-120 435.6 353 57.8
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.1e-118 429.9 350 59.7
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 7.9e-118 427.9 424 50.5
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.4e-117 427.2 381 53.8
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 5.7e-116 421.8 346 58.4
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 3.7e-115 419.1 384 54.7
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 8.5e-112 407.9 315 61.3
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.3e-107 394.0 356 54.5
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 2.8e-107 392.9 312 58.7
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 1.5e-105 387.1 323 57.0
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.4e-103 380.6 338 54.7
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 7.2e-103 378.3 387 50.6
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 1.5e-100 370.5 385 48.6
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 7.0e-98 361.7 395 46.3
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 1.5e-95 354.0 277 60.3
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 3.4e-92 342.8 287 57.5
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.0e-88 331.3 393 45.0
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.0e-88 331.3 250 62.0
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 4.2e-87 325.9 380 42.6
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.2e-86 324.3 306 52.3
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 3.6e-86 322.8 265 59.6
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 4.5e-81 305.8 383 41.0
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 3.3e-79 299.7 401 41.6
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 1.3e-75 287.7 381 40.2
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 6.3e-75 285.4 359 43.5
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.3e-72 277.7 382 40.3
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.1e-66 256.1 311 45.0
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.0e-64 251.5 218 55.0
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 2.6e-52 210.3 300 37.7
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 4.2e-42 176.4 373 30.8
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 9.3e-42 175.3 381 32.8
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 7.8e-41 172.2 379 31.9
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 7.8e-41 172.2 374 31.0
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.7e-40 171.0 374 31.6
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.3e-40 170.6 374 31.3
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 3.0e-40 170.2 371 31.5
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 5.1e-40 169.5 372 32.5
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 6.6e-40 169.1 382 31.9
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 8.7e-40 168.7 380 30.5
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 8.7e-40 168.7 375 32.0
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.1e-39 168.3 377 31.3
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 3.3e-39 166.8 375 31.5
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 3.3e-39 166.8 377 31.8
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 3.3e-39 166.8 393 31.3
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 4.3e-39 166.4 393 31.0
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 9.6e-39 165.2 375 30.4
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 9.6e-39 165.2 377 31.6
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 9.6e-39 165.2 393 31.0
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.6e-38 164.5 375 28.8
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 2.8e-38 163.7 381 29.4
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 2.8e-38 163.7 373 29.2
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.8e-38 163.7 376 31.4
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 2.8e-38 163.7 376 31.4
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.8e-38 163.7 376 31.1
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 2.8e-38 163.7 380 31.8
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.8e-38 163.7 386 31.1
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.8e-38 163.7 386 31.1
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 2.8e-38 163.7 375 28.8
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 3.6e-38 163.3 375 29.3
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 4.8e-38 162.9 377 29.2
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 4.8e-38 162.9 376 31.6
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 6.2e-38 162.5 149 49.0
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 8.1e-38 162.2 373 28.7
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 8.1e-38 162.2 373 28.7
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 8.1e-38 162.2 373 31.1
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.1e-37 161.8 380 31.8
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.4e-37 161.4 114 63.2
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 2.4e-37 160.6 367 31.1
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.4e-37 160.6 376 31.1
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 2.4e-37 160.6 376 30.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 3.1e-37 160.2 377 29.4
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 4.0e-37 159.8 380 30.8
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 4.0e-37 159.8 376 30.9
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 5.3e-37 159.5 364 31.9
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 6.9e-37 159.1 372 31.2
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 9.0e-37 158.7 380 31.1
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 9.0e-37 158.7 371 31.5
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.2e-36 158.3 383 31.6
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 1.5e-36 157.9 386 31.1
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.5e-36 157.9 389 30.6
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 4.4e-36 156.4 380 31.6
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 5.8e-36 156.0 172 50.0
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 5.8e-36 156.0 382 31.4
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 9.9e-36 155.2 386 30.1
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 4.9e-35 152.9 387 30.2
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 1.4e-34 151.4 389 30.1
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 1.9e-34 151.0 382 30.6
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 4.2e-34 149.8 374 29.4
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 1.0e-32 145.2 372 27.4
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 3.1e-29 133.7 374 26.2
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 4.5e-28 129.8 132 48.5
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.1e-26 125.2 380 26.6
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.2e-25 121.7 126 46.8
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.3e-24 118.2 248 31.0
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 3.9e-24 116.7 308 30.2
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 9.6e-23 112.1 86 62.8
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.3e-22 111.7 450 24.7
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.1e-22 110.9 133 42.1
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 8.1e-22 109.0 72 69.4
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.4e-21 108.2 127 43.3
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 3.8e-19 100.1 73 57.5
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 3.0e-16 90.5 213 30.0
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 1.9e-15 87.8 64 59.4
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 3.1e-13 80.5 193 29.5
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 3.1e-13 80.5 75 46.7
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 2.2e-11 74.3 83 44.6
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 3.8e-11 73.6 120 35.0
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 3.2e-10 70.5 72 52.8
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 1.6e-09 68.2 50 64.0
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 6.7e-08 62.8 62 46.8
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 2.8e-06 57.4 34 70.6


User provided reference genes

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