Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.9e-110 402.5 203 100.0
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.9e-110 402.5 203 100.0
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 4.0e-108 394.8 203 97.5
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 4.0e-108 394.8 203 97.5
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.5e-107 392.9 203 97.0
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 3.7e-106 388.3 203 95.6
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 8.8e-100 367.1 202 89.1
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 7.5e-99 364.0 203 89.2
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 9.8e-99 363.6 203 89.2
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.4e-97 359.8 203 88.7
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 2.4e-97 359.0 202 87.6
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 3.1e-97 358.6 202 87.1
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-96 356.7 202 87.1
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.0e-96 355.9 203 87.7
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 2.0e-96 355.9 202 86.6
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.3e-95 353.2 203 85.7
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 2.9e-95 352.1 206 85.4
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-94 349.4 204 86.3
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.6e-93 346.3 203 82.3
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.6e-85 319.7 184 86.4
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 2.8e-85 318.9 202 74.8
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 8.0e-85 317.4 205 80.0
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 2.3e-84 315.8 202 76.2
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.2e-83 313.5 203 74.9
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 4.4e-83 311.6 203 75.4
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.3e-82 310.1 203 74.9
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 8.3e-82 307.4 202 74.3
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.9e-81 306.2 203 71.9
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 3.2e-81 305.4 203 71.9
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 4.1e-81 305.1 200 73.5
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.1e-81 305.1 200 73.5
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 5.4e-81 304.7 201 74.1
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 9.2e-81 303.9 203 71.4
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.6e-80 303.1 200 75.0
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.6e-80 303.1 198 73.2
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 2.0e-80 302.8 203 72.4
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.7e-80 302.4 203 71.4
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 4.6e-80 301.6 203 73.4
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 1.0e-79 300.4 203 73.4
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.0e-79 300.4 203 71.4
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.7e-79 299.7 202 71.3
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.3e-79 299.3 179 81.0
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 3.9e-79 298.5 203 73.4
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.0e-79 298.1 202 72.3
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 5.0e-79 298.1 203 71.4
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.1e-78 297.0 200 71.5
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 1.5e-78 296.6 194 73.2
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.9e-78 296.2 203 70.4
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.9e-78 296.2 198 71.2
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 1.9e-78 296.2 200 70.5
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.5e-78 295.8 202 71.8
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 2.5e-78 295.8 201 70.1
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.3e-78 295.4 201 70.1
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 4.3e-78 295.0 196 74.0
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 5.6e-78 294.7 201 70.1
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 5.6e-78 294.7 203 71.4
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 7.3e-78 294.3 199 71.4
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.8e-77 292.4 201 70.1
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 3.6e-77 292.0 202 68.8
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 3.6e-77 292.0 202 68.8
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 6.2e-77 291.2 198 69.2
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 8.1e-77 290.8 203 70.4
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 8.1e-77 290.8 202 68.3
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.1e-76 290.4 198 69.2
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 1.1e-76 290.4 203 70.0
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.1e-76 290.4 203 70.4
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 3.1e-76 288.9 202 68.3
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.2e-76 288.1 200 70.0
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.8e-76 287.7 200 69.5
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.2e-75 287.0 198 68.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.5e-75 286.6 222 66.2
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 4.4e-75 285.0 202 67.8
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 7.5e-75 284.3 198 68.7
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 9.8e-75 283.9 201 69.7
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 9.8e-75 283.9 198 69.2
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.7e-74 283.1 200 68.5
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 4.9e-74 281.6 199 67.8
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 8.3e-74 280.8 200 65.0
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 8.3e-74 280.8 191 70.2
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.4e-73 280.0 201 68.7
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 3.2e-73 278.9 203 69.0
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 3.2e-73 278.9 203 66.5
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.6e-72 276.6 198 66.7
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.1e-72 276.2 203 66.5
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.3e-71 273.5 199 66.8
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.7e-71 273.1 200 66.5
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 2.3e-71 272.7 199 66.3
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 3.0e-71 272.3 198 67.7
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 3.9e-71 271.9 194 67.5
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.1e-71 271.6 213 63.8
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 6.6e-71 271.2 203 66.0
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.1e-70 270.4 196 65.8
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 4.3e-70 268.5 203 66.0
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 7.3e-70 267.7 203 65.5
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 9.5e-70 267.3 198 65.7
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 3.6e-69 265.4 204 66.2
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 6.2e-69 264.6 200 65.5
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 8.1e-69 264.2 203 63.5
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.4e-68 263.5 200 65.5
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 6.8e-68 261.2 184 68.5
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 8.9e-68 260.8 203 63.1
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.2e-67 260.4 181 68.5
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.4e-67 258.5 181 67.4
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.3e-66 256.9 183 69.4
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 3.7e-66 255.4 193 65.3
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 4.9e-66 255.0 198 61.1
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.1e-65 253.8 200 63.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 3.2e-65 252.3 193 64.8
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 5.4e-65 251.5 178 68.0
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.2e-64 250.4 203 64.5
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.6e-64 250.0 200 62.0
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.6e-64 250.0 179 66.5
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 3.0e-63 245.7 197 59.9
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 5.1e-63 245.0 205 61.5
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 1.1e-62 243.8 326 44.8
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 1.2e-61 240.4 198 60.1
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 4.4e-59 231.9 168 68.5
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.3e-58 230.3 240 53.3
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 7.1e-57 224.6 252 48.8
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 4.6e-56 221.9 222 53.6
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.0e-55 220.7 235 51.1
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 9.0e-52 207.6 167 61.1
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 4.4e-51 205.3 200 53.5
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 3.2e-49 199.1 195 49.7
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.6e-45 185.7 225 46.7
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 9.0e-44 181.0 197 50.3
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 9.9e-43 177.6 194 46.4
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 1.4e-41 173.7 128 68.0
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-39 167.2 120 65.8
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 6.7e-39 164.9 112 69.6
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.1e-36 157.5 174 46.6
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 1.1e-36 157.5 112 68.8
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 5.8e-35 151.8 115 66.1
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.9e-33 146.7 144 51.4
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.6e-32 143.7 94 71.3
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 2.1e-32 143.3 112 62.5
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 3.5e-32 142.5 206 41.3
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.3e-29 134.0 81 76.5
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 8.2e-29 131.3 209 38.3
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.4e-28 130.6 103 63.1
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 6.9e-28 128.3 102 69.6
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.0e-26 124.4 90 68.9
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-26 124.0 74 79.7
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-26 124.0 81 72.8
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 2.2e-26 123.2 71 88.7
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 4.2e-25 119.0 76 84.2
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.5e-25 118.6 81 69.1
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 7.2e-25 118.2 131 47.3
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.7e-24 116.3 130 46.9
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 9.7e-22 107.8 102 53.9
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.1e-20 102.8 72 66.7
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.0e-18 97.8 73 64.4
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 3.8e-18 95.9 195 32.8
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.5e-17 93.2 77 59.7
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.5e-17 92.0 68 64.7
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.7e-14 81.3 118 40.7
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 9.7e-14 81.3 71 60.6
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 2.2e-13 80.1 196 30.1
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 3.7e-13 79.3 105 42.9
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 9.1e-12 74.7 45 77.8
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 2.6e-11 73.2 49 67.3
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 4.5e-11 72.4 41 82.9
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.4e-07 60.8 45 60.0
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 3.9e-07 59.3 48 60.4
BcaC04g21293 Brassica carinata HOM05D023231 ORTHO05D090933 1.1e-06 57.8 66 48.5
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 1.5e-06 57.4 43 55.8
C08p18260 Brassica napus HOM05D023231 ORTHO05D031966 3.3e-06 56.2 36 69.4
C09p33470 Brassica napus HOM05D000209 ORTHO05D000129 7.4e-06 55.1 79 46.8
BolC9t56183H Brassica oleracea HOM05D000209 ORTHO05D000129 7.4e-06 55.1 79 46.8
BcaC04g19635 Brassica carinata HOM05D023231 ORTHO05D005058 9.7e-06 54.7 59 50.8


User provided reference genes

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