Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-164 582.8 295 100.0
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 3.2e-159 565.1 287 99.7
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 3.2e-151 538.5 296 92.9
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.3e-149 532.3 291 93.1
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 3.3e-148 528.5 294 91.5
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-139 500.0 299 89.0
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.5e-132 476.5 301 80.7
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.1e-126 456.1 302 75.5
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 5.2e-125 451.4 303 74.6
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.2e-119 431.8 305 73.1
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.4e-117 426.8 291 74.6
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-104 383.3 305 63.9
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 3.9e-104 382.1 306 65.0
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.1e-103 380.6 307 65.8
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-103 380.2 306 64.7
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.5e-103 380.2 306 64.7
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.2e-102 377.1 332 60.5
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.6e-102 376.7 312 63.1
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-102 376.3 312 63.1
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-101 372.9 312 62.8
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.3e-101 372.9 312 62.8
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 2.3e-101 372.9 311 62.7
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 3.1e-93 345.9 279 64.2
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.0e-93 345.5 295 62.0
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.2e-93 345.1 314 59.9
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 2.4e-90 336.3 276 63.4
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.1e-90 334.7 296 59.5
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 9.2e-90 334.3 295 60.3
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.0e-88 330.9 296 59.1
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 4.7e-86 322.0 293 58.4
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 8.1e-86 321.2 296 57.1
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.4e-85 319.7 217 71.4
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.7e-81 306.2 301 54.5
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 5.1e-80 302.0 268 57.5
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.5e-79 300.4 265 58.5
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 9.6e-79 297.7 264 56.4
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.8e-78 296.2 286 53.8
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 4.7e-78 295.4 266 57.5
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 4.7e-78 295.4 254 57.9
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 6.2e-78 295.0 258 57.8
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 6.2e-78 295.0 269 56.5
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.4e-77 293.9 268 57.5
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.4e-77 293.9 257 57.6
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.8e-77 293.5 298 52.3
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 6.9e-77 291.6 256 59.4
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.2e-76 290.8 282 53.2
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.5e-76 290.4 298 53.0
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.5e-76 290.4 258 57.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.0e-76 290.0 260 55.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.6e-76 289.7 299 52.2
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.6e-76 289.7 290 53.8
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 3.4e-76 289.3 261 56.7
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 3.4e-76 289.3 259 56.4
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 3.4e-76 289.3 261 56.7
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 4.4e-76 288.9 285 52.3
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 9.9e-76 287.7 291 51.9
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 9.9e-76 287.7 259 55.2
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.3e-75 287.3 256 57.8
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-75 287.3 264 54.2
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.3e-75 287.3 253 57.3
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.3e-75 287.3 274 53.3
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 6.4e-75 285.0 295 51.9
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.4e-75 284.6 269 55.0
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.4e-74 283.9 296 50.7
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.9e-74 283.5 266 54.5
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.4e-74 283.1 259 55.6
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.4e-74 283.1 313 48.9
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 4.2e-74 282.3 297 49.5
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 7.1e-74 281.6 263 53.6
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 9.3e-74 281.2 256 56.6
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 9.3e-74 281.2 295 52.5
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.6e-73 280.4 309 49.5
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.6e-73 280.4 294 51.4
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 1.6e-73 280.4 258 53.5
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.7e-73 279.6 308 49.7
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 3.5e-73 279.3 294 48.6
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.5e-73 279.3 259 54.4
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 4.6e-73 278.9 278 50.7
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.0e-73 278.5 267 54.7
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.0e-73 278.5 267 53.6
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 6.0e-73 278.5 262 57.3
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 6.0e-73 278.5 288 53.5
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.3e-72 276.6 250 56.0
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.3e-72 276.6 262 52.7
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 3.9e-72 275.8 291 51.9
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 6.6e-72 275.0 260 51.9
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.7e-72 274.6 200 68.5
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 8.7e-72 274.6 246 56.9
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.1e-71 274.2 185 77.8
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.1e-71 274.2 255 52.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 4.3e-71 272.3 308 50.6
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.6e-70 270.4 286 51.4
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.6e-70 270.4 222 59.5
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.1e-70 270.0 255 55.3
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.8e-70 269.6 298 46.6
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.8e-70 269.6 222 59.0
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.6e-70 269.2 221 58.4
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 6.2e-70 268.5 222 58.1
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 8.1e-70 268.1 326 45.7
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.1e-69 267.7 333 45.9
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.4e-69 267.3 258 52.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.8e-69 266.9 222 58.1
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 2.4e-69 266.5 297 49.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.6e-68 263.1 312 48.1
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 2.6e-68 263.1 267 53.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.6e-68 263.1 222 56.8
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.4e-68 262.7 263 52.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 4.5e-68 262.3 326 42.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.7e-67 260.4 326 42.6
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 4.9e-67 258.8 270 48.1
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.4e-66 257.3 272 50.4
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.4e-66 256.5 347 41.8
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.4e-66 255.4 210 60.5
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 7.1e-66 255.0 211 60.7
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.6e-65 253.8 222 54.1
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 4.6e-65 252.3 211 59.2
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 3.0e-64 249.6 217 58.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.1e-64 248.8 211 60.2
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 6.7e-64 248.4 211 59.2
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 3.3e-63 246.1 206 59.7
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.3e-63 245.7 259 48.3
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 7.4e-63 245.0 206 59.2
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 9.6e-63 244.6 340 42.6
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.6e-62 243.8 210 57.6
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.1e-62 243.4 219 56.6
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.1e-62 243.4 337 42.4
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.1e-62 241.5 220 57.3
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.1e-61 239.6 222 51.4
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 7.6e-60 235.0 269 48.3
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.2e-59 233.4 259 49.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.4e-59 231.9 143 81.1
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.1e-58 231.1 217 51.2
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.0e-56 224.6 268 47.8
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.5e-55 220.7 227 52.9
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.9e-55 220.3 291 43.0
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.9e-55 220.3 205 55.6
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-54 217.6 165 66.7
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.8e-54 216.5 197 58.4
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 3.7e-54 216.1 233 51.5
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.9e-51 205.7 203 49.8
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.4e-50 204.1 176 57.4
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 2.5e-47 193.4 302 41.4
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.3e-46 191.0 236 46.2
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.5e-42 176.8 304 37.5
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-41 174.1 131 67.9
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 7.9e-41 171.8 175 53.7
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 8.8e-40 168.3 120 70.8
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 9.7e-39 164.9 155 52.3
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.3e-38 164.5 120 70.0
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 6.3e-38 162.2 120 69.2
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.3e-35 154.5 134 55.2
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 8.5e-35 151.8 160 50.0
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 5.5e-34 149.1 122 59.8
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 3.6e-33 146.4 266 37.2
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 2.3e-32 143.7 227 40.1
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.1e-29 134.8 132 50.0
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.1e-29 134.8 135 48.9
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.6e-28 130.2 172 42.4
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.2e-27 127.1 185 40.0
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 3.6e-25 119.8 242 33.5
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.8e-19 99.8 84 58.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.6e-17 94.4 77 58.4
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.5e-15 87.8 106 39.6
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.8e-13 80.9 83 48.2
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.9e-12 75.9 197 26.9
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.3e-11 74.7 106 41.5
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 6.5e-11 72.4 85 47.1
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.2e-10 70.1 164 31.1
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 4.2e-10 69.7 282 27.3
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 7.2e-10 68.9 137 35.8
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.6e-09 67.8 138 37.0
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 7.5e-07 58.9 74 44.6
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 8.3e-06 55.5 138 32.6
MCO11G703 Micromonas commoda HOM05D001535 ORTHO05D004010 8.3e-06 55.5 141 29.8


User provided reference genes

Program Settings