Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 5.6e-178 627.5 312 100.0
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 2.0e-175 619.0 312 98.7
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 3.7e-174 614.8 312 97.8
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 3.7e-174 614.8 312 97.8
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 7.3e-170 600.5 312 97.4
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 3.6e-169 598.2 312 96.8
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.0e-167 592.4 312 96.2
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.6e-164 581.3 312 94.2
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.2e-149 531.9 282 95.4
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 9.3e-149 530.4 286 95.1
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 3.2e-117 425.6 321 70.4
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.7e-116 422.5 318 70.8
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.1e-104 384.0 314 64.6
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-103 380.6 312 63.1
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 8.5e-102 374.4 316 62.0
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.2e-101 372.1 314 61.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-100 370.2 313 62.0
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.0e-99 367.5 314 60.8
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-99 366.7 307 62.2
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-98 364.0 304 62.2
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 3.3e-98 362.5 308 61.4
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 7.5e-98 361.3 311 60.8
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.5e-95 352.1 315 60.6
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 3.4e-90 335.9 312 62.5
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.4e-88 330.5 326 53.4
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.5e-87 325.9 334 54.2
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.2e-84 317.4 307 53.7
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.1e-84 316.6 279 58.4
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.8e-84 316.2 307 53.1
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-83 313.5 313 52.4
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 3.0e-83 312.8 286 55.9
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 4.0e-83 312.4 308 52.9
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-82 310.8 170 91.8
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.2e-81 306.6 295 54.9
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.3e-78 296.6 222 65.8
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 8.6e-78 294.7 259 57.9
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 4.3e-77 292.4 259 56.4
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.2e-76 290.8 281 51.2
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 4.7e-76 288.9 261 54.8
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 4.7e-76 288.9 264 55.3
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 8.0e-76 288.1 267 53.6
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 8.0e-76 288.1 260 55.4
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 8.0e-76 288.1 304 49.7
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.0e-75 287.7 278 52.9
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.4e-75 287.3 266 54.5
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.8e-75 287.0 314 48.1
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 3.0e-75 286.2 305 49.8
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.0e-75 286.2 261 55.2
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 4.0e-75 285.8 259 56.0
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 4.0e-75 285.8 261 55.2
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 4.0e-75 285.8 265 55.1
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 6.8e-75 285.0 263 55.1
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 6.8e-75 285.0 281 53.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.2e-74 284.3 307 49.2
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.5e-74 283.9 264 54.2
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.0e-74 283.5 263 54.8
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 2.6e-74 283.1 269 53.9
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 9.8e-74 281.2 261 55.9
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 9.8e-74 281.2 263 52.9
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 9.8e-74 281.2 310 47.4
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.3e-73 280.8 286 52.4
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.3e-73 280.8 260 54.2
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.3e-73 280.8 259 54.1
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.7e-73 280.4 263 54.8
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.7e-73 280.4 316 48.4
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.7e-73 280.4 312 50.0
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.7e-73 280.4 284 52.5
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.2e-73 280.0 270 53.7
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.9e-73 279.6 269 52.8
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.9e-73 279.6 284 52.1
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.9e-73 278.9 291 47.8
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 8.3e-73 278.1 272 51.8
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 8.3e-73 278.1 267 52.8
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.1e-72 277.7 274 51.1
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.1e-72 277.7 273 52.7
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.8e-72 276.9 304 50.3
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.4e-72 276.6 261 54.8
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 2.4e-72 276.6 297 48.1
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.4e-72 276.6 259 52.9
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.4e-72 275.4 284 51.1
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 7.0e-72 275.0 254 54.7
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 9.2e-72 274.6 263 52.5
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.2e-71 274.2 262 53.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 4.6e-71 272.3 301 47.8
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 4.6e-71 272.3 224 61.2
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 7.8e-71 271.6 287 50.5
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.0e-70 271.2 256 54.3
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 3.9e-70 269.2 265 53.2
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 3.9e-70 269.2 246 55.7
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 8.6e-70 268.1 285 48.4
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.9e-69 266.9 224 58.0
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.9e-69 266.9 260 50.0
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.5e-69 266.5 224 58.9
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.3e-69 266.2 201 64.2
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 4.3e-69 265.8 275 52.0
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 4.3e-69 265.8 281 50.2
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 9.5e-69 264.6 260 51.2
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.6e-68 263.8 288 50.3
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 8.0e-68 261.5 263 50.2
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 8.0e-68 261.5 224 58.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.3e-67 260.0 224 58.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 8.9e-67 258.1 281 46.6
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.2e-66 257.7 222 55.9
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.2e-66 257.7 263 51.3
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.5e-66 257.3 289 48.4
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.0e-66 256.9 307 46.9
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.8e-66 255.4 291 48.1
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.7e-65 253.8 291 45.7
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.7e-65 253.8 225 53.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.7e-65 253.8 389 39.8
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.7e-65 253.8 339 44.2
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 4.9e-65 252.3 291 45.4
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.2e-64 249.6 266 50.4
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.0e-63 246.9 359 39.3
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 3.5e-63 246.1 264 48.9
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.0e-62 244.6 265 45.3
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.5e-61 240.7 250 47.2
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 5.6e-61 238.8 214 56.5
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 3.6e-60 236.1 212 54.7
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.7e-60 235.7 212 56.1
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 6.2e-60 235.3 212 55.2
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.2e-60 235.3 212 57.1
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.1e-60 235.0 216 55.6
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.1e-60 235.0 144 81.2
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.8e-59 233.8 203 56.7
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.8e-59 233.8 246 52.0
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 4.0e-59 232.6 203 56.2
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.8e-59 231.9 211 55.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 6.8e-59 231.9 212 54.7
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.9e-56 223.8 218 50.0
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.4e-56 223.4 224 49.1
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 3.2e-56 223.0 298 41.9
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.1e-56 222.6 202 55.0
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.2e-56 221.5 263 45.6
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 6.0e-55 218.8 202 53.5
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 6.0e-55 218.8 197 55.3
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.0e-54 218.0 227 49.8
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 8.6e-54 214.9 259 42.9
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 5.6e-53 212.2 220 49.1
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.0e-51 206.1 196 58.2
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 3.9e-46 189.5 177 51.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.9e-45 187.2 204 44.1
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 9.6e-45 184.9 236 44.1
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.8e-41 172.9 164 53.0
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 5.4e-40 169.1 132 62.1
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.7e-39 166.8 272 37.1
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-38 163.7 130 62.3
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 8.7e-38 161.8 171 50.3
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 3.3e-37 159.8 121 64.5
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.6e-36 157.5 121 63.6
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 2.6e-34 150.2 123 59.3
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.2e-33 147.1 136 50.7
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 3.5e-31 139.8 147 49.0
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.8e-30 137.5 229 36.2
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 8.7e-30 135.2 269 33.5
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.5e-29 134.4 140 48.6
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 9.0e-27 125.2 131 50.4
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.2e-26 124.8 186 41.4
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.8e-26 122.5 170 42.4
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.1e-20 104.0 248 29.8
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.1e-19 101.7 85 61.2
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.8e-18 95.9 78 61.5
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 2.5e-13 80.5 83 47.0
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 2.2e-12 77.4 80 45.0
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.2e-10 71.6 179 34.1
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.2e-10 71.6 212 25.9
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.9e-10 69.3 106 39.6
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.0e-09 68.6 84 44.0
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 3.8e-09 66.6 171 31.0
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 4.2e-08 63.2 138 31.9
Phvul.011G011900 Phaseolus vulgaris HOM05D001535 ORTHO05D004010 4.6e-07 59.7 190 26.8
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 1.3e-06 58.2 177 27.7
Glyma.12G009200 Glycine max HOM05D001535 ORTHO05D004010 3.9e-06 56.6 177 26.6
VMungo1127G0051 Vigna mungo HOM05D001535 ORTHO05D004010 3.9e-06 56.6 153 27.5
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 8.7e-06 55.5 101 28.7


User provided reference genes

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