Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 3.4e-121 438.3 222 100.0
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 2.9e-120 435.3 222 99.5
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.8e-114 416.0 224 94.6
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 2.4e-114 415.6 225 94.2
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 4.6e-102 374.8 228 86.4
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 3.0e-101 372.1 228 85.1
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.9e-100 369.4 228 86.4
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.3e-99 366.7 228 85.1
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 2.4e-98 362.5 228 84.2
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.0e-96 357.1 224 84.4
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 6.5e-96 354.4 227 81.9
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 3.0e-93 345.5 224 80.4
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 6.7e-93 344.4 227 81.1
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 7.4e-92 340.9 226 79.2
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 4.5e-89 331.6 218 79.8
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 8.8e-85 317.4 223 74.4
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 3.5e-81 305.4 190 84.7
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 1.2e-78 297.0 188 83.5
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.7e-75 286.6 223 70.0
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 9.1e-74 280.8 229 67.7
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 2.0e-73 279.6 226 66.8
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.7e-73 279.3 228 66.7
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.7e-72 276.6 228 67.1
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.7e-72 276.6 228 67.1
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 3.2e-71 272.3 229 66.8
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 4.2e-71 271.9 230 65.2
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 9.4e-71 270.8 228 66.2
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.0e-69 267.3 229 62.9
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.4e-69 266.9 229 64.6
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.3e-69 266.2 230 64.8
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 4.0e-69 265.4 229 64.2
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.0e-69 265.4 226 64.6
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 6.8e-69 264.6 225 64.9
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.8e-69 264.6 225 64.9
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 1.5e-68 263.5 225 64.4
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.6e-68 262.7 225 64.0
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 3.4e-68 262.3 225 66.7
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 5.7e-68 261.5 229 63.3
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 5.7e-68 261.5 229 63.3
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 7.5e-68 261.2 234 61.5
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 7.5e-68 261.2 226 63.3
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.3e-67 260.4 223 61.4
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.8e-67 258.5 228 62.7
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.1e-66 257.3 233 63.1
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 1.8e-66 256.5 229 62.9
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 2.4e-66 256.1 226 62.4
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 7.0e-66 254.6 234 60.7
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 2.0e-65 253.1 226 62.8
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 4.5e-65 251.9 227 60.8
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 5.9e-65 251.5 234 60.3
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 5.9e-65 251.5 195 67.2
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 5.9e-65 251.5 230 62.6
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 1.0e-64 250.8 236 60.6
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.3e-64 250.4 227 61.7
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 2.2e-64 249.6 229 62.4
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 3.8e-64 248.8 231 60.2
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 3.8e-64 248.8 230 61.7
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 5.0e-64 248.4 203 67.5
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 6.5e-64 248.1 231 60.6
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.5e-64 248.1 217 64.1
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 6.5e-64 248.1 230 61.3
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 8.5e-64 247.7 228 61.8
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.1e-63 247.3 258 55.0
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.9e-63 246.5 232 60.8
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 3.2e-63 245.7 230 60.0
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 4.2e-63 245.4 233 60.5
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.5e-63 245.0 225 60.4
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 9.5e-63 244.2 231 61.5
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 1.6e-62 243.4 227 60.4
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 1.6e-62 243.4 230 61.3
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 2.7e-62 242.7 236 58.5
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 6.1e-62 241.5 230 59.6
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 8.0e-62 241.1 228 58.3
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.4e-61 240.4 230 60.4
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 1.4e-61 240.4 236 57.6
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.4e-61 240.4 226 59.7
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.8e-61 240.0 229 59.4
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 3.0e-61 239.2 230 58.7
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 3.0e-61 239.2 236 59.3
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 8.8e-61 237.7 155 75.5
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 1.2e-60 237.3 234 57.7
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.2e-60 237.3 235 58.7
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.0e-60 236.5 229 60.3
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 2.6e-60 236.1 204 62.7
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 5.7e-60 235.0 278 51.1
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 7.5e-60 234.6 230 57.8
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 9.8e-60 234.2 156 73.7
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.3e-59 233.8 228 57.9
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 6.3e-59 231.5 227 56.8
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.1e-58 230.7 230 57.4
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.1e-58 230.7 230 57.8
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.4e-58 230.3 229 55.5
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.8e-58 229.9 235 56.2
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.1e-58 229.2 155 72.3
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 3.1e-58 229.2 232 58.2
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 4.1e-58 228.8 228 57.0
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 4.1e-58 228.8 199 63.3
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 9.2e-58 227.6 157 75.2
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 1.6e-57 226.9 201 60.2
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.0e-57 226.5 213 60.6
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 2.7e-57 226.1 224 55.8
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.7e-57 226.1 227 57.7
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 5.9e-57 224.9 230 56.1
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 5.9e-57 224.9 152 74.3
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.0e-56 224.2 228 56.1
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 1.7e-56 223.4 259 53.7
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.3e-56 223.0 236 56.4
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 3.8e-56 222.2 228 53.9
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 3.8e-56 222.2 225 56.9
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 3.8e-56 222.2 225 56.9
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 8.6e-56 221.1 156 73.1
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 7.3e-55 218.0 230 53.9
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 9.5e-55 217.6 250 52.4
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.1e-54 216.5 230 55.2
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.0e-54 214.5 155 68.4
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.0e-53 214.2 224 54.0
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.8e-53 213.4 156 70.5
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 2.3e-53 213.0 247 52.2
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 5.7e-52 208.4 209 57.4
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.1e-50 204.1 229 53.3
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.1e-50 204.1 229 53.3
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 7.0e-50 201.4 225 51.6
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 1.6e-49 200.3 225 55.6
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 2.0e-49 199.9 152 69.7
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 7.8e-49 198.0 228 52.2
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 2.3e-48 196.4 230 50.4
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 6.6e-48 194.9 214 54.2
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.3e-47 191.4 230 53.0
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 8.0e-46 188.0 208 52.9
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.0e-45 187.6 210 51.9
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 3.1e-45 186.0 229 52.4
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 1.2e-44 184.1 132 71.2
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.6e-44 183.0 154 64.9
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 3.7e-43 179.1 227 48.5
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 8.3e-43 177.9 155 62.6
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 8.3e-43 177.9 145 66.9
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.2e-41 174.1 153 62.1
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 6.0e-41 171.8 109 78.9
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 6.8e-37 158.3 125 65.6
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 2.9e-35 152.9 100 78.0
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.1e-33 146.7 153 56.9
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 3.5e-33 146.0 128 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 3.9e-32 142.5 132 59.1
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.6e-32 141.4 131 60.3
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.2e-30 137.5 99 66.7
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.4e-29 134.0 103 68.0
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.3e-29 133.3 71 95.8
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 6.8e-29 131.7 151 53.6
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.8e-29 131.7 132 56.1
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-26 123.6 93 73.1
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.9e-26 123.6 93 73.1
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 9.6e-23 111.3 64 89.1
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 6.2e-22 108.6 75 69.3
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 3.3e-15 86.3 103 43.7
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 7.3e-15 85.1 68 57.4
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 4.5e-12 75.9 94 40.4
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.9e-10 70.5 118 35.6
BcaC03g15079 Brassica carinata HOM05D004550 ORTHO05D005340 7.4e-07 58.5 39 74.4


User provided reference genes

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