Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 8.3e-277 956.8 642 100.0
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 5.6e-233 811.2 658 79.5
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 7.3e-233 810.8 642 90.7
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 9.3e-204 714.1 683 71.4
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.9e-156 557.0 657 61.5
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 3.5e-142 509.6 640 60.3
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 2.6e-137 493.4 657 54.0
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 5.2e-130 469.2 659 57.4
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.5e-113 414.5 660 51.1
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 2.8e-99 367.1 669 45.0
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 4.3e-84 316.6 678 41.0
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 7.5e-44 183.0 670 33.6
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 8.3e-43 179.5 656 31.6
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 5.9e-41 173.3 163 84.0
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 5.9e-41 173.3 692 29.0
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 5.9e-41 173.3 692 29.0
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.6e-40 169.5 701 27.7
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 3.3e-39 167.5 706 32.0
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 4.7e-38 163.7 722 29.5
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.8e-37 161.8 707 30.6
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.0e-36 158.3 653 32.8
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.6e-36 157.9 678 32.9
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 7.5e-36 156.4 653 32.8
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.3e-35 155.6 729 28.8
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.3e-35 155.6 719 29.1
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 8.3e-35 152.9 677 29.5
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.4e-34 152.1 711 28.8
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.4e-34 151.4 671 27.0
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.1e-34 150.6 664 29.2
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 1.7e-32 145.2 680 29.6
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.7e-32 145.2 686 27.6
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 3.8e-32 144.1 656 29.0
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 5.6e-31 140.2 699 31.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 5.6e-31 140.2 655 26.9
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 9.5e-31 139.4 650 27.2
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 8.0e-30 136.3 694 30.4
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.0e-29 136.0 662 28.1
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 1.4e-29 135.6 674 25.2
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 3.0e-29 134.4 635 34.8
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 4.0e-29 134.0 636 30.8
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 2.6e-28 131.3 557 33.6
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 9.8e-28 129.4 752 25.0
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 2.2e-27 128.3 661 31.8
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 2.9e-27 127.9 686 27.4
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 3.7e-27 127.5 655 29.3
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 6.4e-27 126.7 633 29.2
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-26 125.9 685 34.3
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.4e-26 124.8 715 25.0
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 7.0e-26 123.2 645 31.3
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 4.6e-25 120.6 650 32.8
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 6.0e-25 120.2 672 26.8
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.7e-24 118.6 174 50.0
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.3e-24 118.2 682 29.3
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 3.0e-24 117.9 165 41.8
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 3.9e-24 117.5 667 29.2
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 3.9e-24 117.5 675 28.0
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 3.9e-24 117.5 654 27.2
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 6.6e-24 116.7 238 34.5
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 6.6e-24 116.7 676 26.3
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.6e-24 116.7 239 34.3
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.9e-23 115.2 655 26.0
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.9e-23 115.2 652 29.4
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.3e-23 114.4 725 24.8
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 5.6e-23 113.6 179 54.2
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 5.6e-23 113.6 164 55.5
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.2e-22 112.5 165 52.1
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.2e-22 112.5 679 29.9
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 2.1e-22 111.7 651 31.8
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 3.6e-22 110.9 647 26.3
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 4.7e-22 110.5 159 40.3
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 8.0e-22 109.8 263 32.3
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 8.0e-22 109.8 177 40.1
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.1e-21 109.4 159 40.3
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-21 109.4 743 32.2
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.4e-21 109.0 248 33.5
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.4e-21 109.0 159 40.3
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.8e-21 108.6 663 32.0
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 2.3e-21 108.2 175 41.1
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.8e-21 106.7 173 40.5
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 6.8e-21 106.7 168 47.0
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.5e-20 105.5 569 26.7
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.5e-20 105.5 231 34.2
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.5e-20 105.5 697 28.0
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.4e-20 104.4 80 65.0
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.4e-20 104.4 178 40.4
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 5.8e-20 103.6 80 63.8
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 7.5e-20 103.2 645 24.0
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 9.8e-20 102.8 605 26.3
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 9.8e-20 102.8 80 63.8
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.3e-19 102.4 201 33.8
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.7e-19 102.1 164 43.3
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.2e-19 101.7 661 31.5
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 2.9e-19 101.3 68 72.1
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.4e-19 100.1 684 30.7
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.1e-18 99.4 592 32.8
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.4e-18 99.0 166 39.2
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.4e-18 99.0 81 60.5
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.4e-18 99.0 237 33.8
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 1.9e-18 98.6 660 27.3
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.9e-18 98.6 170 47.6
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 2.4e-18 98.2 654 29.8
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 3.2e-18 97.8 248 33.1
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 4.1e-18 97.4 81 59.3
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 5.4e-18 97.1 81 60.5
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.4e-18 97.1 657 27.7
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 9.2e-18 96.3 174 52.3
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 9.2e-18 96.3 652 29.4
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 9.2e-18 96.3 81 58.0
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 9.2e-18 96.3 166 39.8
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 3.5e-17 94.4 167 55.1
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 3.5e-17 94.4 646 23.8
CARHR061930 Cardamine hirsuta HOM05D005042 ORTHO05D006080 6.0e-17 93.6 118 56.8
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.0e-16 92.8 81 56.8
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.0e-16 92.8 80 56.2
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 1.0e-16 92.8 628 23.9
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.3e-16 92.4 221 30.8
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.3e-16 92.4 167 39.5
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.7e-16 92.0 681 28.3
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.3e-16 91.7 80 57.5
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.3e-16 91.7 246 30.9
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.9e-16 90.9 697 28.4
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 5.1e-16 90.5 657 27.5
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 6.6e-16 90.1 80 56.2
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 6.6e-16 90.1 176 42.6
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 8.6e-16 89.7 80 60.0
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 8.6e-16 89.7 670 26.0
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.1e-15 89.4 535 31.2
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.5e-15 89.0 81 56.8
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.5e-15 88.2 160 45.6
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 7.3e-15 86.7 650 25.4
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 9.5e-15 86.3 70 58.6
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 1.2e-14 85.9 81 55.6
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.1e-14 85.1 568 24.8
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 6.2e-14 83.6 167 48.5
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 3.1e-13 81.3 160 39.4
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 5.2e-13 80.5 770 23.6
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 1.5e-12 79.0 154 35.7
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.5e-12 79.0 194 41.2
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.9e-10 72.0 140 35.7
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 5.4e-10 70.5 525 29.3
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-07 62.8 243 29.6
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 7.3e-07 60.1 165 31.5


User provided reference genes

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