Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 2.3e-44 181.8 88 100.0
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 2.3e-44 181.8 88 100.0
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 2.3e-44 181.8 88 100.0
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 1.2e-40 169.5 81 100.0
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 2.6e-40 168.3 81 98.8
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 8.7e-36 153.3 88 81.8
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 6.4e-31 137.1 81 80.2
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 8.4e-31 136.7 81 80.2
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 3.2e-30 134.8 88 73.9
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 3.2e-30 134.8 88 73.9
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 5.5e-30 134.0 88 73.9
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 2.1e-29 132.1 88 72.7
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.5e-27 125.2 92 70.7
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 6.5e-23 110.5 94 60.6
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 4.6e-21 104.4 94 54.3
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 6.1e-21 104.0 89 62.9
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.6e-18 95.9 47 83.0
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 2.2e-15 85.5 46 71.7
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 2.5e-14 82.0 44 72.7
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 9.4e-14 80.1 75 49.3
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 3.0e-12 75.1 81 42.0
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 8.8e-12 73.6 107 38.3
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 8.8e-12 73.6 47 70.2
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 8.8e-12 73.6 84 42.9
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 2.5e-11 72.0 62 50.0
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 2.5e-11 72.0 50 62.0
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 3.3e-11 71.6 52 51.9
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 3.3e-11 71.6 45 62.2
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 4.3e-11 71.2 76 46.1
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 5.7e-11 70.9 86 41.9
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 9.7e-11 70.1 78 42.3
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 9.7e-11 70.1 82 41.5
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.3e-10 69.7 48 62.5
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 1.3e-10 69.7 83 41.0
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 1.3e-10 69.7 53 54.7
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 1.7e-10 69.3 82 41.5
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 2.2e-10 68.9 81 43.2
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 2.8e-10 68.6 59 49.2
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 2.8e-10 68.6 50 54.0
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 3.7e-10 68.2 41 63.4
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 4.8e-10 67.8 41 70.7
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 4.8e-10 67.8 78 37.2
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 1.1e-09 66.6 45 55.6
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 1.4e-09 66.2 67 43.3
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 1.4e-09 66.2 67 52.2
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.4e-09 66.2 67 52.2
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 1.4e-09 66.2 50 56.0
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 1.8e-09 65.9 83 38.6
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.8e-09 65.9 78 47.4
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 2.4e-09 65.5 63 49.2
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 2.4e-09 65.5 63 49.2
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 4.1e-09 64.7 67 50.7
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 4.1e-09 64.7 92 37.0
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 4.1e-09 64.7 41 58.5
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 4.1e-09 64.7 65 52.3
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 5.3e-09 64.3 44 63.6
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 5.3e-09 64.3 44 63.6
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 5.3e-09 64.3 44 63.6
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 5.3e-09 64.3 44 63.6
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 5.3e-09 64.3 44 63.6
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 5.3e-09 64.3 44 63.6
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 5.3e-09 64.3 41 56.1
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 5.3e-09 64.3 84 39.3
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 6.9e-09 63.9 45 53.3
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 6.9e-09 63.9 44 63.6
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 9.1e-09 63.5 86 43.0
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 1.2e-08 63.2 85 41.2
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 1.5e-08 62.8 87 36.8
SGA_v2.0_scaffold36G14535 Striga asiatica HOM05D007757 ORTHO05D009619 1.5e-08 62.8 67 41.8
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 2.0e-08 62.4 41 56.1
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 3.4e-08 61.6 78 39.7
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 3.4e-08 61.6 48 50.0
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 4.5e-08 61.2 53 49.1
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 4.5e-08 61.2 88 36.4
BcaC05g26463 Brassica carinata HOM05D007757 ORTHO05D009619 5.9e-08 60.8 44 59.1
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 5.9e-08 60.8 101 39.6
BolC5t31238H Brassica oleracea HOM05D007757 ORTHO05D009619 5.9e-08 60.8 44 59.1
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 7.7e-08 60.5 47 57.4
A09p39320 Brassica napus HOM05D007757 ORTHO05D009619 1.0e-07 60.1 102 39.2
C05p25050 Brassica napus HOM05D007757 ORTHO05D009619 1.0e-07 60.1 102 39.2
BraA09t39435Z Brassica rapa HOM05D007757 ORTHO05D009619 1.7e-07 59.3 97 40.2
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 1.7e-07 59.3 46 52.2
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 2.2e-07 58.9 50 50.0


User provided reference genes

Program Settings