Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 1.7e-163 579.3 302 100.0
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 6.0e-153 544.3 281 96.4
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 6.0e-153 544.3 281 96.4
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 4.8e-134 481.5 249 96.4
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 5.8e-132 474.6 250 96.0
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 9.4e-122 440.7 249 87.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.5e-119 432.6 272 82.4
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.6e-116 422.5 254 85.0
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 7.2e-114 414.5 272 79.4
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 5.3e-109 398.3 255 80.8
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.5e-108 396.7 256 80.1
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 4.2e-106 388.7 254 79.5
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 8.8e-104 380.9 257 78.2
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 3.3e-103 379.0 249 78.7
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 4.6e-76 288.9 269 61.0
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 4.6e-68 262.3 174 78.2
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.1e-56 224.6 266 52.3
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 3.1e-56 223.0 235 54.0
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 6.4e-46 188.7 279 49.8
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 7.8e-44 181.8 215 55.3
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.0e-43 181.4 279 48.4
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.9e-42 177.2 281 47.3
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 5.6e-42 175.6 248 49.6
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.1e-41 173.7 221 54.8
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.1e-41 173.7 221 54.8
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.1e-41 173.7 221 54.8
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 6.2e-41 172.2 269 47.6
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.1e-40 171.4 279 44.4
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.1e-40 171.4 293 44.0
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.4e-40 171.0 268 47.0
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.4e-40 170.2 268 45.9
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 3.1e-40 169.9 287 42.2
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 6.9e-40 168.7 229 53.3
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.9e-40 168.7 264 44.3
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.5e-39 167.5 300 43.0
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 5.8e-39 165.6 238 49.6
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 7.6e-39 165.2 282 42.6
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 7.6e-39 165.2 237 50.2
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.9e-38 163.3 287 41.5
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.4e-37 161.0 230 49.6
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.9e-37 160.6 267 45.3
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 5.4e-37 159.1 289 46.0
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 7.1e-37 158.7 222 47.7
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.6e-36 157.5 301 41.9
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.6e-36 156.0 295 42.7
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.0e-35 154.8 230 47.4
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.3e-35 154.5 275 44.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 2.3e-35 153.7 235 44.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 3.9e-35 152.9 271 45.0
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 6.6e-35 152.1 265 44.5
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 4.3e-34 149.4 238 45.4
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 5.6e-34 149.1 258 43.4
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 7.4e-34 148.7 293 42.7
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 9.6e-34 148.3 234 45.7
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.3e-33 147.9 275 42.5
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 2.1e-33 147.1 215 49.3
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 4.8e-33 146.0 275 43.3
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 8.1e-33 145.2 256 43.4
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.4e-32 143.7 221 46.2
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 3.1e-32 143.3 291 42.6
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 3.1e-32 143.3 284 40.1
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.1e-32 143.3 229 44.1
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.2e-31 141.4 293 39.2
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 3.4e-31 139.8 243 42.8
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 4.5e-31 139.4 314 39.5
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 5.8e-31 139.0 281 40.6
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 9.9e-31 138.3 259 42.1
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.3e-30 137.9 248 44.8
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.2e-30 137.1 263 39.2
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.2e-30 137.1 286 39.5
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.2e-30 137.1 286 39.5
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 4.9e-30 136.0 239 42.3
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 8.4e-30 135.2 235 41.3
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.4e-29 134.4 235 44.3
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.4e-29 134.4 256 42.2
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.9e-29 134.0 271 39.9
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.4e-29 133.7 161 54.0
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.4e-29 133.7 222 44.1
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 4.2e-29 132.9 257 40.9
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.1e-28 130.6 293 38.6
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.8e-27 127.5 207 40.1
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 2.3e-27 127.1 246 40.7
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 3.9e-27 126.3 247 40.5
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 5.1e-27 125.9 253 41.1
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 8.7e-27 125.2 187 47.6
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 8.7e-27 125.2 246 39.4
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.5e-26 124.4 219 43.4
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.5e-26 124.4 225 41.8
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 2.5e-26 123.6 232 40.1
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.5e-26 123.6 209 43.1
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.3e-26 122.9 183 48.1
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 7.4e-26 122.1 260 40.4
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.4e-26 122.1 208 43.3
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 2.8e-25 120.2 138 52.9
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.7e-25 119.8 93 69.9
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 4.8e-25 119.4 233 41.6
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 6.2e-25 119.0 245 39.2
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 6.2e-25 119.0 216 40.3
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-24 117.9 250 41.6
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.4e-24 117.9 213 40.8
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.4e-24 117.9 228 43.0
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 4.0e-24 116.3 262 39.3
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 9.0e-24 115.2 207 43.5
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 9.0e-24 115.2 93 69.9
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.2e-23 114.8 88 70.5
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 2.6e-23 113.6 200 41.5
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.5e-23 112.8 148 50.7
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.5e-23 112.8 238 39.5
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.7e-22 110.9 211 41.2
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 2.2e-22 110.5 149 52.3
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 2.2e-22 110.5 196 41.8
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 2.2e-22 110.5 105 61.0
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.9e-22 110.2 189 45.0
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.5e-21 107.1 104 58.7
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 2.5e-21 107.1 196 39.3
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.2e-21 106.7 76 75.0
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 4.2e-21 106.3 93 65.6
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 9.3e-21 105.1 220 36.4
BcaC03g14956 Brassica carinata HOM05D004123 ORTHO05D004768 2.1e-20 104.0 68 75.0
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 3.5e-20 103.2 212 42.5
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 3.5e-20 103.2 212 42.5
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.3e-19 101.3 240 38.8
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-19 100.9 210 42.4
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 3.0e-19 100.1 236 39.8
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.1e-19 99.4 115 56.5
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 6.7e-19 99.0 227 37.9
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 8.7e-19 98.6 112 57.1
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 8.7e-19 98.6 99 56.6
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.6e-17 94.4 100 56.0
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 3.4e-15 86.7 217 38.7
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 2.2e-14 84.0 282 33.7
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.4e-14 82.0 207 37.7
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 1.1e-13 81.6 265 32.5
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.2e-09 67.4 94 44.7
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 4.8e-09 66.2 57 57.9
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 8.2e-09 65.5 85 44.7
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 8.2e-09 65.5 54 59.3
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 2.4e-08 63.9 264 31.1
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 2.4e-08 63.9 207 36.7
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 9.0e-08 62.0 184 31.0
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.5e-07 59.7 55 52.7
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 5.9e-07 59.3 152 34.9
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.0e-06 58.5 65 50.8
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 1.7e-06 57.8 80 38.8
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.8e-06 56.6 242 31.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.0e-06 56.2 114 36.0


User provided reference genes

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