Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 6.4e-155 550.8 303 100.0
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 6.3e-142 507.7 304 92.4
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 6.3e-142 507.7 304 92.4
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 8.2e-142 507.3 304 93.4
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 8.2e-142 507.3 304 93.4
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 8.5e-139 497.3 311 83.6
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 4.8e-134 481.5 306 88.6
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 7.7e-132 474.2 311 87.8
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 8.5e-131 470.7 310 87.4
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-130 470.3 309 86.4
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.1e-130 470.3 310 86.5
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.2e-129 466.8 310 87.1
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.5e-127 459.9 306 86.3
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 2.9e-123 445.7 310 83.9
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 5.2e-120 434.9 314 77.1
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 8.8e-120 434.1 314 81.2
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 5.5e-114 414.8 316 81.0
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 3.1e-109 399.1 307 76.5
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.2e-81 307.4 311 62.1
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.2e-70 270.0 302 61.3
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 8.3e-70 268.1 303 58.4
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 4.3e-66 255.8 303 57.4
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 5.6e-66 255.4 303 53.8
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 5.6e-66 255.4 299 57.5
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 7.3e-66 255.0 305 55.4
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 7.3e-66 255.0 305 55.4
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 7.3e-66 255.0 305 55.4
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 2.8e-65 253.1 303 53.8
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 4.4e-63 245.7 301 52.2
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.4e-61 240.0 298 59.1
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.7e-57 225.7 295 51.5
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.2e-55 221.1 292 53.4
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.6e-49 200.7 332 49.4
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 2.1e-49 200.3 327 45.6
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.8e-48 197.2 330 44.5
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 3.1e-48 196.4 325 42.5
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 7.6e-47 191.8 331 42.0
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 8.4e-46 188.3 324 43.2
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.1e-45 188.0 326 41.7
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 9.3e-45 184.9 326 41.1
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 4.6e-44 182.6 333 45.3
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 8.7e-43 178.3 342 44.4
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.1e-42 177.9 327 39.8
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 7.4e-42 175.3 325 42.2
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 9.9e-39 164.9 312 41.7
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.2e-38 163.7 322 37.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 8.4e-38 161.8 307 38.8
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 8.4e-38 161.8 313 39.6
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.4e-37 161.0 325 35.7
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 6.0e-36 155.6 309 34.0
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 7.9e-36 155.2 309 37.5
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 3.0e-35 153.3 332 41.3
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 6.7e-35 152.1 322 42.5
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.5e-34 150.2 321 41.1
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 2.5e-34 150.2 297 36.7
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.4e-34 148.7 309 38.8
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.4e-34 148.7 309 38.5
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.4e-34 148.7 322 33.5
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.6e-33 147.5 312 38.8
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 3.7e-33 146.4 337 38.6
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 6.2e-33 145.6 322 41.9
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.8e-32 144.1 325 40.6
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 4.0e-32 142.9 323 38.4
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 5.3e-32 142.5 310 39.7
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 5.3e-32 142.5 315 36.5
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 5.3e-32 142.5 315 33.3
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 9.0e-32 141.7 319 33.5
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.2e-31 141.4 332 40.7
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 2.0e-31 140.6 325 35.7
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.4e-31 139.8 320 31.9
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.7e-30 137.5 301 42.5
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.2e-30 137.1 320 35.3
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 2.9e-30 136.7 316 42.1
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 8.4e-30 135.2 326 40.2
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-29 134.8 324 40.1
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.1e-29 134.8 319 43.9
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.1e-29 134.8 321 39.9
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.9e-29 134.0 335 39.4
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.9e-29 134.0 321 38.6
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.5e-29 133.7 322 42.9
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.5e-29 133.7 328 31.7
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.2e-29 133.3 325 41.2
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 3.2e-29 133.3 329 33.4
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 3.2e-29 133.3 321 43.3
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 4.2e-29 132.9 306 35.3
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 4.2e-29 132.9 301 38.9
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 5.5e-29 132.5 317 40.1
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 7.1e-29 132.1 325 39.7
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 7.1e-29 132.1 306 36.9
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-28 131.3 324 39.8
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.7e-28 130.2 325 34.8
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.7e-28 130.2 311 32.2
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.0e-28 129.0 322 31.1
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 7.9e-28 128.6 323 31.9
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.3e-27 127.9 326 31.0
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.3e-27 127.9 323 31.9
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.8e-27 127.5 311 31.8
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 2.3e-27 127.1 318 31.1
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 6.7e-27 125.6 322 37.9
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.7e-27 125.2 326 31.3
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.1e-26 124.8 316 40.2
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.1e-26 124.8 304 32.9
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.9e-26 124.0 325 29.8
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 1.6e-25 120.9 320 40.9
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.4e-24 117.9 297 32.0
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.4e-24 117.1 296 38.2
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 6.9e-24 115.5 160 46.9
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 6.9e-24 115.5 317 38.2
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 9.0e-24 115.2 280 36.8
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.2e-23 114.8 303 33.7
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.5e-23 114.4 325 29.8
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 4.5e-23 112.8 317 33.4
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 3.8e-22 109.8 320 29.1
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.1e-21 108.2 316 29.7
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.6e-20 103.2 315 28.6
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.8e-19 100.9 290 29.7
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.3e-19 100.5 317 33.8
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 3.0e-19 100.1 308 39.0
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.0e-19 100.1 316 34.2
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 8.8e-19 98.6 322 35.7
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 2.5e-18 97.1 182 37.4
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 3.3e-18 96.7 200 35.5
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.3e-18 96.3 290 31.7
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 7.4e-18 95.5 296 30.1
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 9.7e-18 95.1 193 38.3
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.8e-17 93.6 303 36.3
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 4.8e-17 92.8 322 30.4
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 6.3e-17 92.4 296 27.7
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.4e-16 91.3 296 28.0
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.8e-16 90.9 308 32.1
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 7.7e-15 85.5 326 35.9
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 3.8e-14 83.2 301 29.2
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 5.0e-14 82.8 150 35.3
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 1.1e-13 81.6 260 39.6
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 4.7e-12 76.3 268 39.2
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 3.0e-11 73.6 300 24.0
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 8.8e-11 72.0 77 45.5
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.1e-10 71.6 284 28.5
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.1e-10 71.6 175 28.6
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 2.6e-10 70.5 287 27.5
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 4.4e-10 69.7 261 31.0
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.7e-10 69.3 200 36.0
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.3e-09 68.2 177 29.4
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.3e-09 68.2 261 30.7
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 4.8e-09 66.2 274 29.2
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.1e-08 63.5 167 28.7
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.0e-07 60.8 293 31.7
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 4.5e-07 59.7 246 35.4
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.3e-06 58.2 136 33.1


User provided reference genes

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