Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 3.5e-213 745.0 461 100.0
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 1.2e-205 719.9 461 97.6
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 1.7e-191 672.9 468 90.0
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 9.4e-190 667.2 463 93.3
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 1.2e-189 666.8 467 90.6
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 2.3e-188 662.5 455 93.6
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 2.3e-188 662.5 467 89.5
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 4.5e-184 648.3 463 91.6
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 1.1e-182 643.7 467 88.0
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 5.2e-180 634.8 467 83.9
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 4.4e-179 631.7 481 83.6
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 4.4e-179 631.7 481 83.6
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 1.7e-175 619.8 469 87.2
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 4.0e-172 608.6 474 84.0
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 3.5e-168 595.5 474 82.7
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 2.2e-167 592.8 474 80.4
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 1.7e-151 540.0 417 85.1
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 1.7e-146 523.5 485 76.1
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 1.2e-139 500.7 474 73.2
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 7.8e-120 434.9 474 67.1
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 5.1e-119 432.2 425 65.9
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 1.1e-118 431.0 412 66.0
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 1.9e-118 430.3 416 67.5
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 3.3e-118 429.5 420 67.1
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 1.3e-117 427.6 464 72.2
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 2.8e-117 426.4 462 67.3
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 6.2e-117 425.2 481 63.2
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 1.1e-116 424.5 417 66.2
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 5.3e-116 422.2 419 67.5
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 6.9e-116 421.8 490 58.8
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 6.9e-116 421.8 421 65.8
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 1.5e-115 420.6 404 64.6
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 2.0e-115 420.2 419 60.9
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 3.4e-115 419.5 462 66.2
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 9.9e-115 417.9 474 64.1
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 2.2e-114 416.8 426 66.2
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 2.9e-114 416.4 415 65.1
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 8.4e-114 414.8 423 64.5
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 8.4e-114 414.8 440 60.0
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 8.4e-114 414.8 419 64.2
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.1e-113 414.5 430 62.6
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 1.1e-113 414.5 422 67.8
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 3.2e-113 412.9 431 59.9
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.2e-113 412.9 502 58.0
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 3.2e-113 412.9 428 57.5
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 3.2e-113 412.9 413 63.7
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 3.2e-113 412.9 415 67.5
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 4.2e-113 412.5 432 62.5
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 5.4e-113 412.1 435 58.6
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 5.4e-113 412.1 422 62.3
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 7.1e-113 411.8 487 59.8
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 2.1e-112 410.2 432 62.5
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 3.5e-112 409.5 415 62.4
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 4.6e-112 409.1 419 62.5
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 7.9e-112 408.3 419 62.5
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 3.0e-111 406.4 422 64.9
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 3.0e-111 406.4 432 60.4
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 3.0e-111 406.4 429 65.0
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 3.9e-111 406.0 413 66.3
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 6.7e-111 405.2 413 66.3
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 8.7e-111 404.8 413 63.9
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 2.5e-110 403.3 409 65.5
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 5.6e-110 402.1 414 65.2
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 1.6e-109 400.6 426 63.6
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 2.8e-109 399.8 425 62.4
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.6e-109 399.4 423 61.7
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 3.6e-109 399.4 409 65.3
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 4.8e-109 399.1 426 62.4
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 8.1e-109 398.3 435 62.3
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 8.1e-109 398.3 425 61.6
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 2.6e-107 393.3 483 59.6
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 3.4e-107 392.9 384 65.6
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 4.9e-106 389.0 429 60.8
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.4e-105 387.5 392 65.1
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 6.0e-104 382.1 478 58.8
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 1.3e-103 380.9 432 59.3
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 3.0e-103 379.8 407 64.9
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 1.9e-102 377.1 435 57.9
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 6.9e-100 368.6 483 56.9
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 9.0e-100 368.2 413 62.7
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 2.0e-99 367.1 462 55.0
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.4e-97 360.9 383 62.1
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 1.2e-96 357.8 410 60.5
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 4.6e-96 355.9 412 56.8
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 2.3e-95 353.6 408 63.2
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 5.1e-95 352.4 437 55.1
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 8.7e-95 351.7 425 60.7
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 1.5e-91 340.9 664 44.0
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 7.6e-91 338.6 427 56.7
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 1.9e-89 334.0 348 74.4
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 4.8e-85 319.3 376 56.1
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 4.1e-84 316.2 413 55.2
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.5e-83 314.3 424 54.0
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.5e-83 314.3 424 54.0
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 2.0e-83 313.9 379 61.5
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 8.5e-82 308.5 401 51.1
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 3.2e-81 306.6 361 71.2
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 4.2e-81 306.2 187 86.1
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.2e-80 304.7 339 59.0
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 3.3e-78 296.6 287 64.5
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 1.1e-76 291.6 479 48.0
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.5e-75 287.7 281 63.0
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 1.7e-74 284.3 284 60.2
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 2.5e-73 280.4 321 64.8
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 3.2e-73 280.0 297 62.6
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 3.7e-69 266.5 267 65.9
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.5e-65 254.6 380 47.9
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 9.4e-65 251.9 287 57.8
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 2.1e-64 250.8 410 45.4
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 1.8e-63 247.7 297 57.9
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 8.2e-61 238.8 324 54.6
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 1.3e-58 231.5 318 54.4
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 3.0e-55 220.3 384 46.6
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 1.5e-54 218.0 621 37.7
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 1.6e-43 181.4 517 37.3
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 3.3e-41 173.7 170 73.5
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 2.3e-34 151.0 102 74.5
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 2.5e-33 147.5 104 75.0
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 4.4e-30 136.7 357 31.1
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 1.9e-28 131.3 88 76.1
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.3e-26 125.2 120 64.2
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 6.6e-26 122.9 97 92.8
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 6.6e-26 122.9 94 68.1
C09p44560 Brassica napus HOM05D041588 ORTHO05D006779 4.3e-25 120.2 100 70.0
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 3.6e-24 117.1 193 40.4
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 5.2e-23 113.2 66 78.8
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 4.9e-21 106.7 99 82.8
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.4e-20 104.4 52 88.5
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 4.6e-19 100.1 108 71.3
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.2e-16 92.0 84 61.9
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.8e-15 88.2 66 65.2
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 6.4e-13 79.7 103 48.5
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 5.4e-12 76.6 97 53.6
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.1e-11 74.7 64 67.2
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 1.2e-08 65.5 43 74.4
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 1.1e-07 62.4 141 29.1
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.2e-06 58.9 88 46.6


User provided reference genes

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