Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1531.5 826 100.0
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1496.1 826 97.2
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1484.9 821 97.3
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1479.5 821 97.1
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1432.9 833 93.3
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1412.1 827 93.0
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1402.9 827 92.5
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1401.7 827 92.4
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1393.3 828 90.5
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1386.3 831 89.9
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1377.1 836 89.7
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 0.0e+00 1375.1 733 98.6
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1365.9 835 90.8
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1364.4 834 88.2
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1335.1 836 87.3
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1274.6 672 97.2
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1234.2 790 84.3
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1156.0 823 73.8
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 834 73.4
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 0.0e+00 1144.4 624 93.3
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 823 73.4
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1131.3 828 74.2
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1130.9 826 73.8
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1126.7 820 73.3
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1126.3 826 74.7
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1124.4 821 74.5
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1123.2 839 72.8
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1119.0 821 74.8
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1116.7 790 73.4
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 825 74.1
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 818 72.1
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 825 70.3
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1108.2 825 73.9
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1108.2 822 70.7
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1107.8 831 70.9
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1103.2 816 70.2
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1102.0 815 72.9
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1101.7 829 72.5
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1100.9 825 73.7
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 822 70.2
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 820 70.2
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 819 70.2
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1099.3 823 71.6
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1095.1 818 70.5
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1094.0 821 72.2
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1091.6 836 70.7
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1091.3 819 70.5
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1090.9 828 72.9
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1089.7 819 70.3
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 822 70.3
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1085.5 819 70.2
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1084.7 824 70.9
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 819 70.0
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1080.5 822 70.0
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1080.1 819 69.7
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1079.7 932 64.7
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 5.7e-312 1073.5 824 71.8
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 1.1e-311 1072.8 828 70.4
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 4.7e-309 1064.3 828 68.7
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 6.2e-309 1063.9 828 68.4
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 8.1e-309 1063.5 828 68.8
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 2.3e-308 1062.0 817 68.5
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 5.2e-308 1060.8 822 70.6
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 1.2e-307 1059.7 837 67.1
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 1.5e-307 1059.3 823 70.1
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 2.6e-307 1058.5 826 69.2
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 9.9e-307 1056.6 822 69.5
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 2.2e-306 1055.4 818 68.0
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 1.1e-305 1053.1 826 67.4
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 1.9e-305 1052.4 825 70.8
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 3.2e-305 1051.6 811 69.3
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 5.4e-305 1050.8 861 68.4
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 6.0e-304 1047.3 825 68.6
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 7.8e-304 1047.0 817 68.1
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 9.5e-302 1040.0 829 67.9
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 1.6e-301 1039.3 825 68.2
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 2.1e-301 1038.9 818 67.0
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 1.1e-300 1036.6 819 67.6
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 1.8e-300 1035.8 850 66.1
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 2.4e-300 1035.4 825 69.5
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 5.2e-300 1034.2 827 68.2
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 2.6e-299 1031.9 831 68.0
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.4e-299 1031.6 760 72.0
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 5.8e-299 1030.8 847 66.0
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 9.9e-299 1030.0 758 72.0
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 9.2e-297 1023.5 812 64.5
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.3e-295 1019.6 830 65.2
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 1.7e-295 1019.2 825 66.2
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 9.6e-294 1013.4 828 65.2
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.5e-291 1006.1 832 66.2
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 2.0e-291 1005.7 896 63.3
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 3.0e-287 991.9 824 64.4
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 1.5e-283 979.5 668 73.7
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 9.9e-283 976.9 817 65.2
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 1.2e-280 969.9 908 60.8
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 3.9e-279 964.9 825 64.0
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 5.3e-268 927.9 647 72.5
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 2.0e-267 926.0 836 59.2
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 5.8e-267 924.5 830 60.5
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.9e-266 922.2 647 72.0
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 3.8e-266 921.8 818 62.2
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 6.5e-266 921.0 824 59.5
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 1.4e-265 919.8 922 58.2
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 6.0e-264 914.4 776 65.1
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 2.3e-255 885.9 798 56.8
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 7.7e-251 870.9 635 70.6
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.3e-250 870.2 833 59.3
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 1.2e-240 837.0 569 73.3
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.0e-238 829.7 823 52.7
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.3e-234 817.0 824 52.2
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 9.7e-230 800.8 809 51.5
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.0e-215 754.2 795 49.8
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 6.8e-215 751.5 827 54.7
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 8.3e-205 718.0 841 52.7
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 3.0e-186 656.4 426 76.1
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 3.2e-148 530.0 478 60.9
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 7.4e-145 518.8 439 63.3
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 4.2e-132 476.5 322 74.8
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 4.4e-129 466.5 787 37.1
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 9.4e-124 448.7 363 75.5
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 2.0e-118 431.0 784 33.9
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 8.5e-117 425.6 302 68.9
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.7e-109 401.4 278 71.6
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.8e-101 373.6 394 55.1
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 1.6e-94 351.7 855 31.2
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.9e-72 277.7 279 56.6
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 2.9e-64 251.1 226 63.7
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.2e-63 247.7 384 47.1
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 2.6e-57 228.0 132 90.2
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 9.3e-47 193.0 140 70.7
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 5.8e-41 173.7 126 71.4
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 8.4e-40 169.9 142 65.5
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-31 141.7 152 49.3
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.2e-31 141.4 152 49.3
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-29 136.3 156 51.9
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 8.7e-29 133.3 110 65.5
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 3.0e-21 108.2 71 84.5
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.4e-10 72.0 130 43.8
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 5.0e-08 64.3 61 52.5


User provided reference genes

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