Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 5.6e-30 133.7 69 100.0
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 2.1e-29 131.7 69 98.6
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 1.4e-25 119.0 69 91.3
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 2.1e-24 115.2 67 89.6
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 2.1e-24 115.2 67 89.6
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 2.3e-23 111.7 67 86.6
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 5.1e-23 110.5 65 87.7
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 5.1e-23 110.5 65 87.7
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 1.9e-22 108.6 65 86.2
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 1.9e-22 108.6 67 85.1
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 1.9e-22 108.6 65 86.2
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 1.9e-22 108.6 65 86.2
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 1.9e-22 108.6 67 85.1
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 4.3e-22 107.5 66 87.9
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 5.6e-22 107.1 67 82.1
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 5.6e-22 107.1 67 82.1
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 5.6e-22 107.1 67 82.1
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 5.6e-22 107.1 67 83.6
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 1.2e-21 105.9 67 82.1
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 2.1e-21 105.1 65 89.2
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.1e-20 102.8 68 83.8
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 1.8e-20 102.1 68 82.4
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 2.4e-20 101.7 68 82.4
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 2.4e-12 75.1 72 65.3
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 6.9e-12 73.6 74 62.2
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 1.2e-11 72.8 69 62.3
Carub.0001s2549 Capsella rubella HOM05D007313 ORTHO05D005299 1.2e-11 72.8 73 63.0
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.2e-11 72.8 54 74.1
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.2e-11 72.8 54 74.1
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.2e-11 72.8 54 74.1
AL1G40310 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 2.6e-11 71.6 74 63.5
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 5.8e-11 70.5 79 62.0
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 5.8e-11 70.5 79 62.0
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 5.8e-11 70.5 79 62.0
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 5.8e-11 70.5 68 60.3
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 7.6e-11 70.1 74 62.2
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 7.6e-11 70.1 74 62.2
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 1.3e-10 69.3 75 60.0
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 1.3e-10 69.3 67 58.2
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 1.7e-10 68.9 52 67.3
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 3.8e-10 67.8 59 66.1
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 4.9e-10 67.4 60 63.3
AT1G24600 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 6.4e-10 67.0 73 58.9
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 6.4e-10 67.0 68 58.8
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 5.4e-09 63.9 71 59.2
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 7.1e-09 63.5 69 55.1
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 7.1e-09 63.5 53 66.0
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 7.1e-09 63.5 55 63.6
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 1.2e-08 62.8 52 65.4
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 1.2e-08 62.8 68 54.4
A07p12350 Brassica napus HOM05D007313 ORTHO05D005299 2.1e-08 62.0 69 58.0
BraA07t29016Z Brassica rapa HOM05D007313 ORTHO05D005299 2.1e-08 62.0 69 58.0
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 2.7e-08 61.6 76 52.6
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 3.5e-08 61.2 54 66.7
Sabra10G0078300 Salix brachista HOM05D007313 ORTHO05D005299 4.6e-08 60.8 67 56.7
BcaB03g14014 Brassica carinata HOM05D007313 ORTHO05D005299 6.0e-08 60.5 69 56.5
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 6.0e-08 60.5 66 57.6
C05p25550 Brassica napus HOM05D007313 ORTHO05D005299 1.3e-07 59.3 66 59.1
BolC5t31282H Brassica oleracea HOM05D007313 ORTHO05D005299 1.3e-07 59.3 66 59.1
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 1.3e-07 59.3 76 51.3
BcaC06g35248 Brassica carinata HOM05D007313 ORTHO05D005299 1.8e-07 58.9 69 56.5
C07p18250 Brassica napus HOM05D007313 ORTHO05D005299 1.8e-07 58.9 69 56.5
BolC7t42335H Brassica oleracea HOM05D007313 ORTHO05D005299 1.8e-07 58.9 69 56.5
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 3.0e-07 58.2 50 64.0
BcaC05g26505 Brassica carinata HOM05D007313 ORTHO05D005299 5.1e-07 57.4 66 57.6
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 5.1e-07 57.4 61 60.7
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 1.5e-06 55.8 53 58.5
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 1.9e-06 55.5 66 57.6
Haze_10890 Corylus avellana HOM05D007313 ORTHO05D005299 4.3e-06 54.3 54 61.1
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 4.3e-06 54.3 68 54.4
BcaC05g26701 Brassica carinata HOM05D007313 ORTHO05D005299 7.4e-06 53.5 67 56.7
A09p38970 Brassica napus HOM05D007313 ORTHO05D005299 7.4e-06 53.5 68 55.9
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 7.4e-06 53.5 59 55.9
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 7.4e-06 53.5 64 54.7
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 7.4e-06 53.5 75 49.3
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 9.6e-06 53.1 59 54.2
FvH4_5g17640 Fragaria vesca HOM05D008500 ORTHO05D005299 9.6e-06 53.1 77 49.4
FAN18G0107 Fragaria x ananassa HOM05D008500 ORTHO05D005299 9.6e-06 53.1 77 49.4
Manes.14G157100 Manihot esculenta HOM05D008500 ORTHO05D005299 9.6e-06 53.1 55 56.4
RcHm_v2.0_Chr7g0178031 Rosa chinensis HOM05D008500 ORTHO05D005299 9.6e-06 53.1 77 49.4
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 9.6e-06 53.1 75 49.3


User provided reference genes

Program Settings