Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 4.8e-106 387.9 200 100.0
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 6.4e-103 377.5 199 98.5
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 1.8e-97 359.4 201 94.5
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 1.2e-96 356.7 201 95.0
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 1.7e-95 352.8 201 94.5
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 1.9e-94 349.4 201 93.0
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 5.7e-83 311.2 200 86.0
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 2.8e-74 282.3 200 78.5
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 7.0e-65 251.1 200 71.0
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 5.5e-62 241.5 202 68.8
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 2.7e-61 239.2 194 69.6
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 2.3e-60 236.1 202 66.3
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 6.3e-50 201.4 188 61.7
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 4.5e-48 195.3 193 60.1
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 4.2e-46 188.7 201 56.7
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 9.5e-46 187.6 201 57.2
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 4.7e-45 185.3 192 57.3
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 2.3e-44 183.0 203 56.2
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 3.0e-44 182.6 201 53.2
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 1.5e-43 180.3 201 54.7
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 5.7e-43 178.3 201 55.2
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 9.8e-43 177.6 200 55.0
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 4.9e-42 175.3 203 54.7
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 1.8e-41 173.3 193 57.0
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 2.0e-40 169.9 193 52.3
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 5.9e-40 168.3 193 53.4
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 1.3e-39 167.2 200 52.0
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 1.7e-39 166.8 203 52.7
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 2.9e-39 166.0 204 51.0
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 2.9e-39 166.0 198 52.5
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.8e-39 165.6 197 50.8
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 3.8e-39 165.6 203 53.7
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 3.8e-39 165.6 213 49.8
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 5.0e-39 165.2 203 51.2
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 5.0e-39 165.2 193 53.9
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 6.6e-39 164.9 192 53.1
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 8.6e-39 164.5 193 49.7
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 1.1e-38 164.1 196 51.5
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 1.5e-38 163.7 169 54.4
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 1.5e-38 163.7 198 50.0
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.5e-38 162.9 196 51.5
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 3.3e-38 162.5 213 49.3
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 3.3e-38 162.5 193 51.8
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 4.3e-38 162.2 193 51.8
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 4.3e-38 162.2 192 52.6
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 7.3e-38 161.4 166 53.6
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 1.2e-37 160.6 152 54.6
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 1.6e-37 160.2 131 61.8
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 2.8e-37 159.5 155 53.5
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 6.1e-37 158.3 193 51.8
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 6.1e-37 158.3 186 50.5
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 1.0e-36 157.5 187 51.9
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 1.4e-36 157.1 194 49.5
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 1.4e-36 157.1 233 45.1
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 1.4e-36 157.1 150 57.3
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 1.4e-36 157.1 192 51.6
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 1.8e-36 156.8 152 52.6
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 1.8e-36 156.8 193 50.8
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 3.0e-36 156.0 202 50.0
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 4.0e-36 155.6 180 48.9
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 1.5e-35 153.7 154 54.5
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 1.5e-35 153.7 193 50.8
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 1.5e-35 153.7 156 53.2
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 1.3e-34 150.6 166 51.8
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 2.2e-34 149.8 192 49.5
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 5.4e-33 145.2 165 49.7
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 9.2e-33 144.4 165 50.3
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 1.2e-32 144.1 184 47.3
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 2.0e-32 143.3 171 50.9
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 2.0e-32 143.3 194 44.8
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 2.0e-32 143.3 164 53.0
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 6.0e-32 141.7 206 43.2
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 3.9e-31 139.0 184 46.2
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 5.0e-31 138.7 202 45.5
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 1.1e-30 137.5 183 48.6
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 1.5e-30 137.1 237 40.9
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 1.5e-30 137.1 111 62.2
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 4.3e-30 135.6 168 44.0
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 5.6e-30 135.2 186 46.8
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 5.6e-30 135.2 193 45.6
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 2.1e-29 133.3 102 63.7
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 2.3e-28 129.8 209 41.1
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 4.0e-28 129.0 225 41.8
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 5.2e-28 128.6 161 46.0
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 6.8e-28 128.3 201 43.8
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 2.6e-27 126.3 159 44.0
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 7.5e-27 124.8 138 50.0
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 3.1e-20 102.8 56 91.1
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 5.2e-20 102.1 84 60.7
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 1.5e-19 100.5 101 54.5
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 4.1e-17 92.4 105 48.6
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 4.1e-17 92.4 83 55.4
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 9.2e-17 91.3 108 44.4
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 1.2e-16 90.9 148 43.2
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.6e-16 90.5 75 57.3
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 5.1e-15 85.5 142 40.8
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.1e-14 84.3 143 39.2
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 1.1e-14 84.3 112 49.1
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 1.1e-14 84.3 71 57.7
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 4.3e-14 82.4 111 37.8
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 5.6e-14 82.0 111 51.4
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 5.6e-14 82.0 111 38.7
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 2.8e-13 79.7 76 55.3
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 1.1e-12 77.8 91 45.1
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 1.1e-12 77.8 91 45.1
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 5.2e-12 75.5 105 33.3
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 2.6e-11 73.2 70 57.1
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 2.6e-11 73.2 57 61.4
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 4.4e-11 72.4 92 53.3
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 4.4e-11 72.4 92 53.3
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 2.2e-10 70.1 84 48.8
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 2.9e-10 69.7 199 35.7
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 3.8e-10 69.3 115 40.0
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 3.5e-08 62.8 51 54.9
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 2.3e-07 60.1 43 65.1
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 3.0e-07 59.7 62 50.0
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 4.3e-06 55.8 51 56.9
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 7.3e-06 55.1 49 55.1


User provided reference genes

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