Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 8.7e-78 293.5 142 100.0
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 8.7e-78 293.5 142 100.0
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 1.9e-77 292.4 142 99.3
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 4.3e-77 291.2 142 99.3
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 4.3e-77 291.2 142 99.3
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 3.1e-75 285.0 142 97.2
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-74 283.1 142 95.8
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.2e-74 283.1 142 95.8
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 5.8e-74 280.8 142 94.4
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 5.8e-74 280.8 142 94.4
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 2.9e-73 278.5 142 93.7
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 6.4e-73 277.3 142 93.7
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 6.4e-73 277.3 142 93.7
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 6.4e-73 277.3 142 93.7
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 2.4e-72 275.4 142 93.0
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 3.2e-72 275.0 142 93.0
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 3.2e-72 275.0 142 93.0
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 4.2e-72 274.6 142 93.0
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 3.0e-70 268.5 142 88.7
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.9e-69 265.8 142 87.3
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.3e-68 263.1 142 86.6
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 1.8e-67 259.2 142 86.6
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 3.1e-67 258.5 142 88.0
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.2e-65 252.3 142 83.8
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 2.9e-65 251.9 142 83.1
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 3.8e-65 251.5 142 81.7
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 4.2e-64 248.1 142 82.4
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 7.1e-64 247.3 142 81.0
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 7.1e-64 247.3 142 81.0
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 9.3e-64 246.9 142 81.7
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 8.7e-62 240.4 191 64.9
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 8.2e-60 233.8 142 76.1
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 8.2e-60 233.8 142 75.4
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 1.1e-59 233.4 140 77.1
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.4e-59 233.0 142 76.1
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 1.8e-59 232.6 142 76.1
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.4e-59 232.3 142 75.4
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 4.1e-59 231.5 142 74.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 5.3e-59 231.1 142 73.9
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 5.3e-59 231.1 142 75.4
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 6.9e-59 230.7 142 73.2
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 6.9e-59 230.7 142 74.6
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 6.9e-59 230.7 142 73.9
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 9.0e-59 230.3 142 73.9
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 9.0e-59 230.3 142 75.4
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 9.0e-59 230.3 142 74.6
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.5e-58 229.6 142 72.5
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 4.5e-58 228.0 142 73.9
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.9e-58 227.6 142 74.6
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 5.9e-58 227.6 142 74.6
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 7.6e-58 227.3 142 74.6
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 73.9
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 1.3e-57 226.5 141 75.2
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 73.9
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 2.9e-57 225.3 139 75.5
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 72.5
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 72.5
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 73.2
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 73.2
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.1e-56 223.4 141 71.6
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 1.4e-56 223.0 141 71.6
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 71.1
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 71.1
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 3.2e-56 221.9 141 71.6
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 71.8
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 72.5
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 71.8
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 71.8
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 69.0
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 72.5
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 71.1
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 71.8
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.2e-55 219.9 141 72.3
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 72.5
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 2.1e-55 219.2 142 70.4
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 2.1e-55 219.2 142 71.1
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 3.6e-55 218.4 142 69.7
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 4.6e-55 218.0 141 71.6
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.3e-54 216.5 141 72.3
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.9e-54 214.9 138 72.5
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 69.7
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 8.7e-54 213.8 138 71.7
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 8.7e-54 213.8 138 71.7
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.5e-53 212.2 140 67.1
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 4.3e-53 211.5 136 70.6
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.7e-53 211.1 140 67.1
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 7.4e-53 210.7 140 67.1
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 68.8
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.6e-52 209.5 138 71.7
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.2e-52 209.1 138 72.5
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 6.3e-52 207.6 141 70.2
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 8.2e-52 207.2 139 69.1
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 8.2e-52 207.2 141 70.2
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 8.2e-52 207.2 138 71.7
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 8.2e-52 207.2 135 72.6
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 8.2e-52 207.2 140 65.7
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.1e-51 206.8 142 69.0
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 2.4e-51 205.7 138 72.5
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 67.4
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 67.4
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 4.1e-51 204.9 141 66.0
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 4.1e-51 204.9 137 66.4
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.1e-51 204.9 142 66.9
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 5.3e-51 204.5 141 66.7
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 9.1e-51 203.8 142 67.6
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.2e-50 203.4 142 66.2
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.6e-50 202.2 170 58.8
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 2.6e-50 202.2 135 70.4
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 5.9e-50 201.1 193 54.4
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 5.9e-50 201.1 193 54.4
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 7.7e-50 200.7 141 68.1
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 1.3e-49 199.9 142 64.1
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.3e-49 199.9 141 69.5
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 2.2e-49 199.1 154 62.3
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 2.2e-49 199.1 142 69.7
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.8e-49 198.4 142 66.2
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 1.1e-48 196.8 138 67.4
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.1e-48 196.8 141 67.4
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.5e-48 195.7 137 67.9
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 7.2e-48 194.1 142 65.5
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 7.2e-48 194.1 142 64.1
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.2e-47 193.4 142 65.5
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 2.1e-47 192.6 143 65.0
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 2.1e-47 192.6 142 64.8
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 4.6e-47 191.4 138 65.2
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 1.0e-46 190.3 142 64.8
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.8e-46 189.5 117 75.2
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.8e-46 189.5 138 63.8
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.3e-46 189.1 142 64.1
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.9e-46 188.3 142 62.0
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 6.7e-46 187.6 142 61.3
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 8.8e-46 187.2 140 65.0
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.5e-45 186.4 142 62.0
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 5.7e-45 184.5 135 63.0
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 9.7e-45 183.7 142 60.6
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.7e-44 183.0 140 65.0
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 2.4e-43 179.1 138 63.0
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 4.1e-43 178.3 141 63.8
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.5e-42 176.4 157 56.1
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 3.4e-42 175.3 142 59.9
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.5e-42 174.9 175 52.6
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 2.7e-39 165.6 108 70.4
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 1.5e-37 159.8 140 52.9
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 4.4e-37 158.3 141 56.7
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 2.2e-36 156.0 125 60.0
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.8e-36 154.8 137 53.3
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-35 153.3 141 54.6
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.4e-35 153.3 137 52.6
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.6e-34 149.1 138 53.6
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 3.5e-34 148.7 142 51.4
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 2.2e-33 146.0 285 33.0
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-32 143.3 129 51.9
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.9e-32 142.9 129 51.9
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.2e-29 133.7 124 51.6
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 7.0e-27 124.4 115 58.3
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 5.0e-25 118.2 127 45.7
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 6.5e-25 117.9 73 71.2
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 2.7e-23 112.5 112 58.0
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 6.1e-23 111.3 80 65.0
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 6.1e-23 111.3 81 64.2
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 4.4e-21 105.1 67 70.1
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-20 103.6 109 49.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-20 103.6 109 49.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-20 103.6 109 49.5
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 1.7e-20 103.2 115 54.8
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 9.1e-19 97.4 67 67.2
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 7.7e-18 94.4 121 41.3
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 3.8e-17 92.0 87 52.9
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 5.0e-17 91.7 116 40.5
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 1.1e-16 90.5 59 66.1
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 1.1e-16 90.5 59 66.1
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.3e-14 82.8 77 53.2
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 1.2e-13 80.5 68 54.4
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 1.5e-13 80.1 77 49.4
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 8.3e-12 74.3 68 51.5
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 3.5e-10 68.9 71 53.5
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.0e-09 67.4 123 38.2
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.3e-09 67.0 42 71.4
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 2.9e-09 65.9 39 66.7
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 5.0e-09 65.1 32 90.6
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.1e-08 63.9 40 72.5
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 1.9e-08 63.2 42 66.7
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 4.7e-07 58.5 34 73.5
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 1.0e-06 57.4 34 70.6
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 3.0e-06 55.8 62 45.2
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 5.2e-06 55.1 34 70.6
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.8e-06 54.7 36 66.7


User provided reference genes

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