Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p33510 Brassica napus HOM05D000274 ORTHO05D007831 6.9e-63 243.8 124 100.0
BraA07t30977Z Brassica rapa HOM05D000274 ORTHO05D007831 3.0e-50 201.8 106 97.2
BcaC08g46104 Brassica carinata HOM05D000274 ORTHO05D007831 1.1e-49 199.9 106 96.2
BcaB03g15255 Brassica carinata HOM05D000274 ORTHO05D007831 3.7e-48 194.9 106 95.3
BolC6t39080H Brassica oleracea HOM05D000274 ORTHO05D007831 3.1e-47 191.8 108 92.6
C06p39920 Brassica napus HOM05D000274 ORTHO05D007831 5.3e-47 191.0 106 94.3
Thhalv10018911m.g Eutrema salsugineum HOM05D000274 ORTHO05D007831 1.9e-44 182.6 106 88.7
Sp5g21610 Schrenkiella parvula HOM05D000274 ORTHO05D007831 1.9e-44 182.6 106 88.7
Aa31LG2G3170 Aethionema arabicum HOM05D000274 ORTHO05D007831 1.5e-38 162.9 106 80.2
AT1G66670 Arabidopsis thaliana HOM05D000274 ORTHO05D007831 8.5e-37 157.1 106 79.2
AL2G24630 Arabidopsis lyrata HOM05D000274 ORTHO05D007831 2.5e-36 155.6 106 79.2
CARHR058720 Cardamine hirsuta HOM05D000274 ORTHO05D007831 2.5e-36 155.6 106 79.2
Carub.0002s1287 Capsella rubella HOM05D000274 ORTHO05D007831 9.4e-36 153.7 107 78.5
THA.LOC104805596 Tarenaya hassleriana HOM05D000274 ORTHO05D007831 1.4e-26 123.2 108 65.7
Cpa.g.sc116.12 Carica papaya HOM05D000274 ORTHO05D007831 2.7e-14 82.4 121 45.5
Potri.004G092100 Populus trichocarpa HOM05D000274 ORTHO05D007831 3.5e-14 82.0 97 51.5
Ciclev10012172m.g Citrus clementina HOM05D000274 ORTHO05D007831 1.0e-13 80.5 107 46.7
COL.COLO4_27121 Corchorus olitorius HOM05D000274 ORTHO05D007831 1.3e-13 80.1 106 50.0
Sabra04G0061900 Salix brachista HOM05D000274 ORTHO05D007831 2.9e-13 79.0 69 62.3
Duzib138G1129 Durio zibethinus HOM05D000274 ORTHO05D007831 1.1e-12 77.0 106 48.1
Manes.02G074000 Manihot esculenta HOM05D000274 ORTHO05D007831 5.5e-12 74.7 113 46.9
Thecc.04G123500 Theobroma cacao HOM05D000274 ORTHO05D007831 7.2e-12 74.3 106 46.2
Atru.chr1.1770 Acer truncatum HOM05D000274 ORTHO05D007831 2.1e-11 72.8 121 44.6
Dinv19001 Davidia involucrata HOM05D000274 ORTHO05D007831 2.1e-11 72.8 67 61.2
Eucgr.J01541 Eucalyptus grandis HOM05D000274 ORTHO05D007831 2.1e-11 72.8 64 64.1
MD02G1275200 Malus domestica HOM05D000274 ORTHO05D007831 2.1e-11 72.8 91 50.5
MD07G1043100 Malus domestica HOM05D000274 ORTHO05D007831 2.7e-11 72.4 87 51.7
Prupe.2G045800 Prunus persica HOM05D000274 ORTHO05D007831 2.7e-11 72.4 85 50.6
MELO3C020312.2 Cucumis melo HOM05D000274 ORTHO05D007831 3.6e-11 72.0 94 52.1
CSS0039425 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D007831 4.7e-11 71.6 68 54.4
CiPaw.03G067500 Carya illinoinensis HOM05D000274 ORTHO05D007831 6.1e-11 71.2 115 47.0
QL02p048549 Quercus lobata HOM05D000274 ORTHO05D007831 1.8e-10 69.7 115 44.3
Sed0007094 Sechium edule HOM05D000274 ORTHO05D007831 1.8e-10 69.7 115 44.3
CAN.G625.76 Capsicum annuum HOM05D000274 ORTHO05D007831 2.3e-10 69.3 49 73.5
ECA232G0344 Erigeron canadensis HOM05D000274 ORTHO05D007831 2.3e-10 69.3 56 66.1
CANSAT56G1490 Cannabis sativa HOM05D000274 ORTHO05D007831 3.0e-10 68.9 54 64.8
Nitab4.5_0003598g0090 Nicotiana tabacum HOM05D000274 ORTHO05D007831 4.0e-10 68.6 94 48.9
Sopen02g035900 Solanum pennellii HOM05D000274 ORTHO05D007831 4.0e-10 68.6 67 50.7
Nitab4.5_0002456g0170 Nicotiana tabacum HOM05D000274 ORTHO05D007831 5.2e-10 68.2 59 64.4
TAR622G0238 Trochodendron aralioides HOM05D000274 ORTHO05D007831 5.2e-10 68.2 67 56.7
ClCG05G010770 Citrullus lanatus HOM05D000274 ORTHO05D007831 6.8e-10 67.8 114 43.9
Cc07_g08270 Coffea canephora HOM05D000274 ORTHO05D007831 8.8e-10 67.4 64 57.8
Sed0010396 Sechium edule HOM05D000274 ORTHO05D007831 8.8e-10 67.4 113 44.2
Sed0012596 Sechium edule HOM05D000274 ORTHO05D007831 8.8e-10 67.4 113 44.2
Sed0012669 Sechium edule HOM05D000274 ORTHO05D007831 8.8e-10 67.4 113 44.2
FAN01G1026 Fragaria x ananassa HOM05D000274 ORTHO05D007831 1.2e-09 67.0 68 58.8
FAN03G2000 Fragaria x ananassa HOM05D000274 ORTHO05D007831 1.2e-09 67.0 68 58.8
TWI74G0782 Tripterygium wilfordii HOM05D000274 ORTHO05D007831 1.2e-09 67.0 98 48.0
CANSAT56G2315 Cannabis sativa HOM05D000274 ORTHO05D007831 1.5e-09 66.6 122 44.3
CsaV3_3G021700 Cucumis sativus L. HOM05D000274 ORTHO05D007831 1.5e-09 66.6 94 51.1
FvH4_7g04110 Fragaria vesca HOM05D000274 ORTHO05D007831 1.5e-09 66.6 61 60.7
FAN06G3687 Fragaria x ananassa HOM05D000274 ORTHO05D007831 1.5e-09 66.6 61 60.7
Oeu041975.1 Olea europaea HOM05D000274 ORTHO05D007831 1.5e-09 66.6 58 58.6
Gohir.A07G076200 Gossypium hirsutum HOM05D000274 ORTHO05D007831 2.0e-09 66.2 50 68.0
PGR004G2815 Punica granatum HOM05D000274 ORTHO05D007831 2.0e-09 66.2 50 72.0
RcHm_v2.0_Chr1g0327981 Rosa chinensis HOM05D000274 ORTHO05D007831 2.0e-09 66.2 60 58.3
Solyc02g091280.3 Solanum lycopersicum HOM05D000274 ORTHO05D007831 2.0e-09 66.2 60 55.0
PGSC0003DMG402030641 Solanum tuberosum HOM05D000274 ORTHO05D007831 2.0e-09 66.2 59 61.0
Lsat_1_v5_gn_4_155160 Lactuca sativa HOM05D000274 ORTHO05D007831 2.6e-09 65.9 58 62.1
Oeu030806.2 Olea europaea HOM05D000274 ORTHO05D007831 2.6e-09 65.9 112 40.2
Gohir.D07G080700 Gossypium hirsutum HOM05D000274 ORTHO05D007831 3.4e-09 65.5 107 43.9
PSO063G5550 Papaver somniferum HOM05D000274 ORTHO05D007831 3.4e-09 65.5 73 53.4
MSTRG.23609 Avicennia marina HOM05D000274 ORTHO05D007831 5.7e-09 64.7 60 58.3
Peaxi162Scf00803g00423 Petunia axillaris HOM05D000274 ORTHO05D007831 5.7e-09 64.7 46 69.6
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 9.8e-09 63.9 67 56.7
Glyma.02G091200 Glycine max HOM05D000274 ORTHO05D007831 9.8e-09 63.9 81 53.1
PSO782G4478 Papaver somniferum HOM05D000274 ORTHO05D007831 9.8e-09 63.9 73 53.4
SalBow3G4436 Salvia bowleyana HOM05D000274 ORTHO05D007831 9.8e-09 63.9 55 60.0
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.3e-08 63.5 67 56.7
AUR62023207 Chenopodium quinoa HOM05D000274 ORTHO05D007831 1.3e-08 63.5 56 62.5
FAN10G1368 Fragaria x ananassa HOM05D000504 ORTHO05D000403 1.3e-08 63.5 68 55.9
Gorai.001G085800 Gossypium raimondii HOM05D000274 ORTHO05D007831 1.3e-08 63.5 107 43.0
HanXRQChr09g0262361 Helianthus annuus HOM05D000274 ORTHO05D007831 1.7e-08 63.2 62 59.7
unitig_88.g27801 Utricularia gibba HOM05D000274 ORTHO05D007831 1.7e-08 63.2 47 66.0
arahy.Tifrunner.gnm1.ann1.BD9PAW Arachis hypogaea HOM05D000274 ORTHO05D007831 2.2e-08 62.8 73 53.4
EL10Ac2g04500 Beta vulgaris HOM05D000274 ORTHO05D007831 2.2e-08 62.8 114 42.1
Migut.L00478 Erythranthe guttata HOM05D000274 ORTHO05D007831 2.2e-08 62.8 56 57.1
Glyma.18G291900 Glycine max HOM05D000274 ORTHO05D007831 2.2e-08 62.8 106 45.3
Phvul.008G010000 Phaseolus vulgaris HOM05D000274 ORTHO05D007831 2.8e-08 62.4 69 58.0
Medtr7g082980 Medicago truncatula HOM05D000274 ORTHO05D007831 3.7e-08 62.0 64 57.8
RcHm_v2.0_Chr1g0372191 Rosa chinensis HOM05D000274 ORTHO05D007831 3.7e-08 62.0 49 67.3
Hma1.2p1_0283F.1_g113610 Hydrangea macrophylla HOM05D000274 ORTHO05D007831 4.9e-08 61.6 67 55.2
Sc10g0000930 Simmondsia chinensis HOM05D000274 ORTHO05D007831 4.9e-08 61.6 54 64.8
vmacro05496 Vaccinium macrocarpon HOM05D000274 ORTHO05D007831 4.9e-08 61.6 113 41.6
TPR.G28538 Trifolium pratense HOM05D000274 ORTHO05D007831 6.3e-08 61.2 76 52.6
arahy.Tifrunner.gnm1.ann1.CE4L5A Arachis hypogaea HOM05D000274 ORTHO05D007831 8.3e-08 60.8 73 53.4
Lalb_Chr10g0091591 Lupinus albus HOM05D000274 ORTHO05D007831 8.3e-08 60.8 91 46.2
Lj1g0005631 Lotus japonicus HOM05D000274 ORTHO05D007831 1.1e-07 60.5 49 69.4
Hma1.2p1_0283F.1_g113620 Hydrangea macrophylla HOM05D000274 ORTHO05D007831 2.4e-07 59.3 47 68.1
DCAR_025884 Daucus carota HOM05D000274 ORTHO05D007831 3.1e-07 58.9 47 68.1
Rhsim10G0078600 Rhododendron simsii HOM05D002272 ORTHO05D005405 3.1e-07 58.9 63 54.0
HPP92_024465 Vanilla planifolia HOM05D000274 ORTHO05D015775 3.1e-07 58.9 69 53.6
Aqoxy3G03964 Aquilegia oxysepala HOM05D000274 ORTHO05D007831 4.1e-07 58.5 108 40.7
Psat3g096320 Pisum sativum HOM05D000274 ORTHO05D007831 4.1e-07 58.5 49 69.4
VMungo1383G2054 Vigna mungo HOM05D000274 ORTHO05D007831 4.1e-07 58.5 49 65.3
SGA_v2.0_scaffold221G42710 Striga asiatica HOM05D000274 ORTHO05D007831 7.0e-07 57.8 95 38.9
Os01g0507900 Oryza sativa ssp. japonica HOM05D000274 ORTHO05D007831 1.6e-06 56.6 60 53.3
Hund13691 Selenicereus undatus HOM05D000274 ORTHO05D007831 1.6e-06 56.6 118 44.1
Ah.16g101390 Amaranthus hybridus HOM05D000274 ORTHO05D007831 2.0e-06 56.2 110 39.1
MBI16_g32950_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D007831 2.0e-06 56.2 81 45.7
Nn3g18178 Nelumbo nucifera HOM05D000274 ORTHO05D007831 5.9e-06 54.7 80 43.8
CDE10G1171 Ceratophyllum demersum HOM05D000274 ORTHO05D007831 7.7e-06 54.3 76 40.8


User provided reference genes

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