Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 3.4e-48 194.5 88 100.0
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.2e-45 186.0 88 95.5
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.2e-45 186.0 89 96.6
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 2.5e-43 178.3 95 89.5
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 3.3e-43 177.9 88 89.8
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 9.6e-43 176.4 87 89.7
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 4.8e-42 174.1 87 87.4
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.1e-42 173.3 87 88.5
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.1e-41 172.9 95 86.3
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 4.0e-41 171.0 82 92.7
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 2.2e-39 165.2 86 88.4
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.2e-37 159.5 87 79.3
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.3e-36 156.0 89 80.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 3.0e-36 154.8 91 76.9
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.5e-35 152.5 86 77.9
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 2.5e-35 151.8 80 80.0
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 3.3e-35 151.4 91 74.7
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 7.4e-35 150.2 86 77.9
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 7.4e-35 150.2 86 76.7
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 9.6e-35 149.8 83 77.1
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 2.1e-34 148.7 76 82.9
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 2.1e-34 148.7 87 73.6
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 2.1e-34 148.7 89 77.5
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 2.1e-34 148.7 80 80.0
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 2.8e-34 148.3 86 75.6
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 2.8e-34 148.3 88 76.1
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 2.8e-34 148.3 86 79.1
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.8e-34 148.3 83 77.1
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.8e-34 148.3 81 79.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 3.7e-34 147.9 80 80.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 3.7e-34 147.9 80 80.0
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 3.7e-34 147.9 87 73.6
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 6.2e-34 147.1 87 74.7
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 6.2e-34 147.1 91 75.8
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 6.2e-34 147.1 81 80.2
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 6.2e-34 147.1 80 77.5
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 6.2e-34 147.1 80 77.5
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 8.1e-34 146.7 78 84.6
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 8.1e-34 146.7 86 72.1
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.1e-33 146.4 85 77.6
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.1e-33 146.4 87 77.0
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.4e-33 146.0 85 77.6
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.4e-33 146.0 80 76.2
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.4e-33 146.0 80 76.2
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.4e-33 146.0 87 70.1
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.4e-33 146.0 81 80.2
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.4e-33 146.0 87 75.9
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.8e-33 145.6 76 81.6
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 2.4e-33 145.2 80 77.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 2.4e-33 145.2 85 75.3
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.1e-33 144.8 91 72.5
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 4.0e-33 144.4 88 75.0
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 4.0e-33 144.4 80 75.0
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 4.0e-33 144.4 80 75.0
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 5.3e-33 144.1 79 78.5
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 6.9e-33 143.7 80 75.0
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 6.9e-33 143.7 88 75.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 9.0e-33 143.3 83 73.5
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.2e-32 142.9 77 77.9
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.2e-32 142.9 86 76.7
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.5e-32 142.5 76 80.3
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 1.5e-32 142.5 86 76.7
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 2.0e-32 142.1 80 77.5
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 2.0e-32 142.1 81 77.8
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.0e-32 142.1 92 69.6
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 2.0e-32 142.1 80 75.0
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.6e-32 141.7 75 80.0
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 3.4e-32 141.4 81 76.5
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 4.5e-32 141.0 86 70.9
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 5.8e-32 140.6 90 72.2
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 5.8e-32 140.6 84 75.0
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 7.6e-32 140.2 85 71.8
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 7.6e-32 140.2 97 64.9
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.7e-31 139.0 87 67.8
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 3.8e-31 137.9 87 66.7
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.1e-30 136.3 76 77.6
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 6.0e-29 130.6 76 71.1
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 2.5e-27 125.2 130 49.2
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 2.1e-26 122.1 131 48.1
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 1.8e-20 102.4 76 59.2
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 2.3e-20 102.1 85 63.5
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 1.8e-17 92.4 199 32.7
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.3e-15 86.3 69 59.4
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 5.0e-15 84.3 42 81.0
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 4.2e-14 81.3 40 80.0
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 6.1e-13 77.4 42 76.2
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 1.0e-12 76.6 39 79.5
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.4e-12 76.3 52 69.2
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 3.0e-12 75.1 42 76.2
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 4.3e-11 71.2 48 64.6
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 1.3e-10 69.7 47 63.8
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.7e-10 68.2 86 40.7
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 3.7e-10 68.2 80 42.5
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 6.3e-10 67.4 89 38.2
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.1e-09 66.6 80 40.0
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.4e-09 66.2 84 39.3
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.4e-09 66.2 80 40.0
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.4e-09 66.2 80 40.0
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.8e-09 65.9 79 38.0
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.4e-09 65.5 80 38.8
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.4e-09 65.5 80 38.8
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 2.4e-09 65.5 80 38.8
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.1e-09 65.1 37 73.0
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 3.1e-09 65.1 80 38.8
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 3.1e-09 65.1 79 38.0
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 4.1e-09 64.7 89 37.1
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 4.1e-09 64.7 79 38.0
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 4.1e-09 64.7 78 38.5
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 4.1e-09 64.7 80 37.5
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 6.9e-09 63.9 80 37.5
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 6.9e-09 63.9 80 37.5
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 9.1e-09 63.5 80 38.8
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.2e-08 63.2 78 35.9
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.2e-08 63.2 80 38.8
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 1.2e-08 63.2 80 37.5
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.2e-08 63.2 78 38.5
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 1.5e-08 62.8 80 37.5
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 1.5e-08 62.8 88 35.2
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.5e-08 62.8 84 36.9
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 37.5
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 37.5
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 37.5
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 37.5
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 37.5
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 37.5
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.0e-08 62.4 86 37.2
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 38.8
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 2.0e-08 62.4 78 37.2
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 37.5
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 37.5
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.0e-08 62.4 80 36.2
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 2.6e-08 62.0 80 37.5
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 2.6e-08 62.0 87 35.6
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 3.4e-08 61.6 80 37.5
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.4e-08 61.6 86 37.2
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 3.4e-08 61.6 86 37.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 3.4e-08 61.6 84 36.9
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 3.4e-08 61.6 84 36.9
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 3.4e-08 61.6 82 39.0
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 4.5e-08 61.2 80 36.2
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 4.5e-08 61.2 79 35.4
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 4.5e-08 61.2 80 37.5
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 4.5e-08 61.2 89 36.0
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 4.5e-08 61.2 80 33.8
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 5.9e-08 60.8 85 34.1
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 5.9e-08 60.8 80 37.5
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.9e-08 60.8 83 36.1
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 5.9e-08 60.8 87 36.8
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 5.9e-08 60.8 84 35.7
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 5.9e-08 60.8 80 36.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 7.7e-08 60.5 80 36.2
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 7.7e-08 60.5 88 35.2
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 7.7e-08 60.5 88 35.2
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.3e-07 59.7 88 35.2
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.3e-07 59.7 45 55.6
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.7e-07 59.3 99 33.3
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.2e-07 58.9 80 35.0
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 2.2e-07 58.9 30 80.0
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 2.9e-07 58.5 87 34.5
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 2.9e-07 58.5 80 35.0
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.9e-07 58.5 84 35.7
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 5.0e-07 57.8 80 33.8
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 5.0e-07 57.8 91 34.1
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 5.0e-07 57.8 88 35.2
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 5.0e-07 57.8 84 34.5
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.1e-06 56.6 84 34.5
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 1.4e-06 56.2 78 33.3
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 2.5e-06 55.5 80 32.5
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 3.2e-06 55.1 89 32.6
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 4.2e-06 54.7 103 31.1
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 5.5e-06 54.3 102 30.4
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 9.4e-06 53.5 84 32.1
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 9.4e-06 53.5 108 27.8


User provided reference genes

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