Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p32350 Brassica napus HOM05D006816 ORTHO05D008666 0.0e+00 1137.1 620 100.0
BraA07t30858Z Brassica rapa HOM05D006816 ORTHO05D008666 0.0e+00 1119.0 621 98.2
C06p38240 Brassica napus HOM05D006816 ORTHO05D008666 0.0e+00 1102.4 620 96.1
BolC6t38923H Brassica oleracea HOM05D006816 ORTHO05D008666 0.0e+00 1099.0 620 96.1
BcaC08g46032 Brassica carinata HOM05D006816 ORTHO05D008666 0.0e+00 1091.6 621 94.5
BcaB03g15378 Brassica carinata HOM05D006816 ORTHO05D008666 0.0e+00 1082.8 621 94.4
Sp5g22850 Schrenkiella parvula HOM05D006816 ORTHO05D008666 9.1e-297 1023.1 625 90.4
Thhalv10018280m.g Eutrema salsugineum HOM05D006816 ORTHO05D008666 5.3e-289 997.3 627 86.8
CARHR060480 Cardamine hirsuta HOM05D006816 ORTHO05D008666 7.4e-283 976.9 625 88.0
AT1G67840 Arabidopsis thaliana HOM05D006816 ORTHO05D008666 5.0e-279 964.1 625 87.4
AL2G26590 Arabidopsis lyrata HOM05D006816 ORTHO05D008666 6.5e-279 963.8 624 87.2
Carub.0002s1430 Capsella rubella HOM05D006816 ORTHO05D008666 1.8e-276 955.7 630 86.5
Aa31sc755G30 Aethionema arabicum HOM05D006816 ORTHO05D008666 3.0e-260 901.7 617 78.9
THA.LOC104825556 Tarenaya hassleriana HOM05D006816 ORTHO05D008666 8.6e-231 803.9 628 72.6
Cpa.g.sc33.36 Carica papaya HOM05D006816 ORTHO05D008666 1.4e-204 716.8 537 70.6
TAR622G0126 Trochodendron aralioides HOM05D006816 ORTHO05D008666 1.3e-194 683.7 542 68.3
Dinv15216 Davidia involucrata HOM05D006816 ORTHO05D008666 7.4e-190 667.9 565 65.8
TWI36G0164 Tripterygium wilfordii HOM05D006816 ORTHO05D008666 5.3e-188 661.8 642 59.5
Gohir.A03G133700 Gossypium hirsutum HOM05D006816 ORTHO05D008666 9.0e-188 661.0 548 67.0
Ciclev10030964m.g Citrus clementina HOM05D006816 ORTHO05D008666 1.1e-185 654.1 565 65.1
Gohir.D02G158100 Gossypium hirsutum HOM05D006816 ORTHO05D008666 1.1e-185 654.1 548 66.4
Gorai.005G177300 Gossypium raimondii HOM05D006816 ORTHO05D008666 5.5e-185 651.7 630 62.7
FAN22G0176 Fragaria x ananassa HOM05D006816 ORTHO05D008666 3.0e-183 646.0 620 60.5
QL03p057598 Quercus lobata HOM05D006816 ORTHO05D008666 3.9e-183 645.6 573 62.8
Eucgr.H02486 Eucalyptus grandis HOM05D006816 ORTHO05D008666 5.1e-183 645.2 563 63.4
GSVIVG01000542001 Vitis vinifera HOM05D006816 ORTHO05D008666 6.7e-183 644.8 640 59.8
COL.COLO4_23463 Corchorus olitorius HOM05D006816 ORTHO05D008666 6.3e-181 638.3 657 59.1
FAN17G1412 Fragaria x ananassa HOM05D006816 ORTHO05D008666 6.3e-181 638.3 539 65.3
Manes.13G022900 Manihot esculenta HOM05D006816 ORTHO05D008666 3.4e-179 632.5 573 62.3
Ah.02g130220 Amaranthus hybridus HOM05D006816 ORTHO05D008666 1.3e-178 630.6 641 59.4
MD13G1099700 Malus domestica HOM05D006816 ORTHO05D008666 1.1e-177 627.5 627 58.9
Haze_12261 Corylus avellana HOM05D006816 ORTHO05D008666 7.2e-177 624.8 640 57.0
Hund06034 Selenicereus undatus HOM05D006816 ORTHO05D008666 1.6e-176 623.6 574 60.6
Lj3C1059T10 Lonicera japonica HOM05D006816 ORTHO05D008666 3.6e-176 622.5 546 64.3
Glyma.05G174600 Glycine max HOM05D006816 ORTHO05D008666 2.3e-175 619.8 544 64.5
CsaV3_5G031010 Cucumis sativus L. HOM05D006816 ORTHO05D008666 6.3e-173 611.7 566 60.8
VMungo0251G0196 Vigna mungo HOM05D006816 ORTHO05D008666 1.1e-172 610.9 544 63.4
Lalb_Chr07g0185401 Lupinus albus HOM05D006816 ORTHO05D008666 4.1e-172 609.0 545 62.8
HanXRQChr17g0569531 Helianthus annuus HOM05D006816 ORTHO05D008666 2.0e-171 606.7 534 61.8
Phvul.002G259600 Phaseolus vulgaris HOM05D006816 ORTHO05D008666 2.0e-171 606.7 563 61.5
AUR62024254 Chenopodium quinoa HOM05D006816 ORTHO05D008666 4.5e-171 605.5 603 58.7
Atru.chr11.2152 Acer truncatum HOM05D006816 ORTHO05D008666 7.7e-171 604.7 624 57.5
Solyc05g013670.3 Solanum lycopersicum HOM05D006816 ORTHO05D008666 2.9e-170 602.8 568 59.9
PSO063G6228 Papaver somniferum HOM05D006816 ORTHO05D008666 3.8e-170 602.4 575 59.3
Sopen05g008580 Solanum pennellii HOM05D006816 ORTHO05D008666 6.5e-170 601.7 635 56.5
PGSC0003DMG400018598 Solanum tuberosum HOM05D006816 ORTHO05D008666 1.1e-169 600.9 634 57.1
MELO3C011940.2 Cucumis melo HOM05D006816 ORTHO05D008666 2.5e-169 599.7 574 60.1
FvH4_4g25720 Fragaria vesca HOM05D006816 ORTHO05D008666 5.5e-169 598.6 620 57.3
EL10Ac6g13857 Beta vulgaris HOM05D006816 ORTHO05D008666 1.6e-168 597.0 628 56.5
Lsat_1_v5_gn_4_4020 Lactuca sativa HOM05D006816 ORTHO05D008666 1.6e-168 597.0 565 59.6
PSO754G0080 Papaver somniferum HOM05D006816 ORTHO05D008666 1.6e-168 597.0 575 58.8
Nitab4.5_0006963g0030 Nicotiana tabacum HOM05D006816 ORTHO05D008666 2.1e-168 596.7 566 61.0
ECA234G3219 Erigeron canadensis HOM05D006816 ORTHO05D008666 4.7e-168 595.5 528 61.0
Migut.K00611 Erythranthe guttata HOM05D006816 ORTHO05D008666 6.1e-168 595.1 541 60.8
Sed0004203 Sechium edule HOM05D006816 ORTHO05D008666 1.0e-167 594.3 604 55.6
TPR.G6183 Trifolium pratense HOM05D006816 ORTHO05D008666 1.0e-167 594.3 568 59.0
Ca_17778_v3 Cicer arietinum L. HOM05D006816 ORTHO05D008666 1.4e-167 594.0 550 61.8
Oeu057544.1 Olea europaea HOM05D006816 ORTHO05D008666 1.8e-167 593.6 635 55.1
SalBow2G0630 Salvia bowleyana HOM05D006816 ORTHO05D008666 1.8e-167 593.6 585 58.5
Lj4g0008868 Lotus japonicus HOM05D006816 ORTHO05D008666 2.3e-167 593.2 555 60.7
Sabra10G0021100 Salix brachista HOM05D006816 ORTHO05D008666 8.8e-167 591.3 643 56.1
Medtr8g089810 Medicago truncatula HOM05D006816 ORTHO05D008666 9.7e-166 587.8 552 59.1
Nn4g22582 Nelumbo nucifera HOM05D006816 ORTHO05D008666 3.7e-165 585.9 562 60.1
FAN12G1622 Fragaria x ananassa HOM05D006816 ORTHO05D008666 3.1e-164 582.8 539 61.0
Aqoxy5G03738 Aquilegia oxysepala HOM05D006816 ORTHO05D008666 4.1e-164 582.4 530 61.3
CANSAT01G2021 Cannabis sativa HOM05D006816 ORTHO05D008666 7.7e-163 578.2 627 56.5
ClCG05G025840 Citrullus lanatus HOM05D006816 ORTHO05D008666 1.1e-161 574.3 571 58.3
PGR119G0117 Punica granatum HOM05D006816 ORTHO05D008666 1.9e-161 573.5 554 59.2
Psat7g059360 Pisum sativum HOM05D006816 ORTHO05D008666 9.4e-161 571.2 546 59.2
AUR62005487 Chenopodium quinoa HOM05D006816 ORTHO05D008666 1.2e-160 570.9 643 54.1
RcHm_v2.0_Chr4g0433151 Rosa chinensis HOM05D006816 ORTHO05D008666 8.0e-160 568.2 620 54.5
Cc11_g15850 Coffea canephora HOM05D006816 ORTHO05D008666 2.6e-158 563.1 569 58.2
Peaxi162Scf00128g00318 Petunia axillaris HOM05D006816 ORTHO05D008666 6.3e-157 558.5 570 57.0
unitig_699.g19932 Utricularia gibba HOM05D006816 ORTHO05D008666 1.0e-154 551.2 546 56.6
vmacro01121 Vaccinium macrocarpon HOM05D006816 ORTHO05D008666 8.5e-154 548.1 646 53.9
CSS0008455 Camellia sinensis var. sinensis HOM05D006816 ORTHO05D008666 1.9e-153 547.0 550 57.8
Duzib251G0886 Durio zibethinus HOM05D006816 ORTHO05D008666 1.0e-151 541.2 549 57.6
ATR0824G245 Amborella trichopoda HOM05D006816 ORTHO05D008666 1.3e-146 524.2 545 54.3
Zm00001eb319330 Zea mays HOM05D006816 ORTHO05D008666 4.9e-141 505.8 579 52.5
CAN.G436.5 Capsicum annuum HOM05D006816 ORTHO05D008666 3.5e-139 499.6 469 60.1
Actinidia01356 Actinidia chinensis HOM05D006816 ORTHO05D008666 1.5e-134 484.2 485 60.0
Nitab4.5_0000524g0100 Nicotiana tabacum HOM05D006816 ORTHO05D008666 5.8e-134 482.3 493 58.8
Sc11g0000930 Simmondsia chinensis HOM05D006816 ORTHO05D008666 6.8e-127 458.8 468 57.1
DCAR_031163 Daucus carota HOM05D006816 ORTHO05D008666 4.9e-125 452.6 542 50.4
Thecc.02G261900 Theobroma cacao HOM05D006816 ORTHO05D008666 4.4e-118 429.5 474 57.6
SEGI_18687 Sequoiadendron giganteum HOM05D006816 ORTHO05D008666 2.3e-114 417.2 541 45.5
SGA_v2.0_scaffold100G29566 Striga asiatica HOM05D006816 ORTHO05D008666 4.9e-109 399.4 582 44.2
Potri.010G047500 Populus trichocarpa HOM05D006816 ORTHO05D008666 1.7e-101 374.4 375 59.2
FAN07G2231 Fragaria x ananassa HOM05D006816 ORTHO05D008666 6.4e-101 372.5 461 52.9
CiPaw.05G180700 Carya illinoinensis HOM05D006816 ORTHO05D008666 3.5e-99 366.7 323 65.9
HPP92_023364 Vanilla planifolia HOM05D006816 ORTHO05D008666 3.9e-98 363.2 316 61.4
arahy.Tifrunner.gnm1.ann1.2HFS1Z Arachis hypogaea HOM05D006816 ORTHO05D008666 3.3e-97 360.1 381 59.1
arahy.Tifrunner.gnm1.ann1.CH9KSW Arachis hypogaea HOM05D006816 ORTHO05D008666 4.0e-95 353.2 380 58.2
Prupe.1G246300 Prunus persica HOM05D006816 ORTHO05D008666 8.4e-93 345.5 471 48.8
Os12g0292900 Oryza sativa ssp. japonica HOM05D006816 ORTHO05D008666 1.3e-80 305.1 376 50.8
CDE02G3152 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 3.7e-80 303.5 449 44.3
Mapoly0088s0066 Marchantia polymorpha HOM05D006816 ORTHO05D008666 1.7e-69 268.1 566 35.2
MBI17_g43191_MAGBIO Magnolia biondii HOM05D006816 ORTHO05D008666 1.4e-55 221.9 251 55.4
Glyma.08G131850 Glycine max HOM05D006816 ORTHO05D008666 1.3e-53 215.3 167 70.1
Pp3c11_24610 Physcomitrium patens HOM05D006816 ORTHO05D008666 1.7e-45 188.3 526 31.4
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 1.6e-35 155.2 133 60.9
Psat3g153200 Pisum sativum HOM05D006816 ORTHO05D008666 6.1e-35 153.3 115 65.2
COL.COLO4_35805 Corchorus olitorius HOM05D006816 ORTHO05D008666 3.4e-33 147.5 97 72.2
HPP92_023363 Vanilla planifolia HOM05D006816 ORTHO05D008666 2.0e-30 138.3 136 55.1
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 2.9e-29 134.4 99 66.7
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 2.5e-28 131.3 95 69.5
CDE09G0157 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 2.0e-25 121.7 162 43.2
CBR_g52389 Chara braunii HOM05D006816 ORTHO05D008666 1.3e-24 119.0 354 27.4
Actinidia08129 Actinidia chinensis HOM05D006816 ORTHO05D008666 2.0e-17 95.1 118 50.8
Actinidia01355 Actinidia chinensis HOM05D006816 ORTHO05D008666 4.4e-17 94.0 59 74.6
FvH4_4g35670 Fragaria vesca HOM05D006816 ORTHO05D008666 1.6e-14 85.5 87 57.5
FAN22G1065 Fragaria x ananassa HOM05D000247 ORTHO05D000288 3.9e-13 80.9 87 52.9
CBR_g52391 Chara braunii HOM05D006816 ORTHO05D008666 8.6e-13 79.7 191 31.4


User provided reference genes

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